Analysis of interatomic Contacts of Structural Units in PDB entry:
5HCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HCF entry

There are 5 chains in PDB entry 5HCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 23GLU 366
B
 THR 23LYS 367
C
 THR 23GLU 366
D
 THR 23GLY 368
E
 THR 23ALA 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5HCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 121Right-handed 310
Helix 2
AA2
A
194 198Right-handed alpha
Helix 3
AA3
A
336 348Right-handed alpha
Helix 4
AA4
A
352 365Right-handed alpha
Helix 5
AA5
B
117 121Right-handed 310
Helix 6
AA6
B
194 198Right-handed alpha
Helix 7
AA7
B
336 348Right-handed alpha
Helix 8
AA8
B
351 365Right-handed alpha
Helix 9
AA9
C
117 121Right-handed 310
Helix 10
AB1
C
194 198Right-handed alpha
Helix 11
AB2
C
336 348Right-handed alpha
Helix 12
AB3
C
351 362Right-handed alpha
Helix 13
AB4
D
117 121Right-handed 310
Helix 14
AB5
D
194 198Right-handed alpha
Helix 15
AB6
D
336 348Right-handed alpha
Helix 16
AB7
D
351 365Right-handed alpha
Helix 17
AB8
E
117 121Right-handed 310
Helix 18
AB9
E
194 198Right-handed alpha
Helix 19
AC1
E
336 348Right-handed alpha
Helix 20
AC2
E
351 366Right-handed alpha
Helix 21
AC3
F
117 121Right-handed 310
Helix 22
AC4
F
194 198Right-handed alpha
Helix 23
AC5
F
336 348Right-handed alpha
Helix 24
AC6
F
351 365Right-handed alpha
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There are 24 sheets in PDB entry 5HCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
327 334anti-parallel
Strand 3
A
64 67anti-parallel
Strand 4
A
48 51anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
327 334anti-parallel
Strand 3
A
91 98anti-parallel
Strand 4
A
167 174anti-parallel
Strand 5
A
179 184anti-parallel
Strand 6
A
187 193anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
72 84anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
105 107anti-parallel
Strand 5
A
129 136anti-parallel
Strand 6
A
139 148anti-parallel
Strand 7
A
151 154anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
72 84anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
110 113anti-parallel
Strand 5
A
129 136anti-parallel
Strand 6
A
139 148anti-parallel
Strand 7
A
151 154anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
327 334anti-parallel
Strand 3
B
64 67anti-parallel
Strand 4
B
48 51anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
327 334anti-parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
167 174anti-parallel
Strand 5
B
179 184anti-parallel
Strand 6
B
187 193anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
72 84anti-parallel
Strand 3
B
312 321anti-parallel
Strand 4
B
105 107anti-parallel
Strand 5
B
129 136anti-parallel
Strand 6
B
139 148anti-parallel
Strand 7
B
151 154anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
72 84anti-parallel
Strand 3
B
312 321anti-parallel
Strand 4
B
110 113anti-parallel
Strand 5
B
129 136anti-parallel
Strand 6
B
139 148anti-parallel
Strand 7
B
151 154anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 28first strand
Strand 2
C
327 334anti-parallel
Strand 3
C
64 67anti-parallel
Strand 4
C
48 51anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 28first strand
Strand 2
C
327 334anti-parallel
Strand 3
C
91 98anti-parallel
Strand 4
C
167 174anti-parallel
Strand 5
C
179 184anti-parallel
Strand 6
C
187 193anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
72 84anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
105 107anti-parallel
Strand 5
C
129 136anti-parallel
Strand 6
C
139 148anti-parallel
Strand 7
C
151 153anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
72 84anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
110 113anti-parallel
Strand 5
C
129 136anti-parallel
Strand 6
C
139 148anti-parallel
Strand 7
C
151 153anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 28first strand
Strand 2
D
327 334anti-parallel
Strand 3
D
64 67anti-parallel
Strand 4
D
48 51anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 28first strand
Strand 2
D
327 334anti-parallel
Strand 3
D
91 98anti-parallel
Strand 4
D
167 174anti-parallel
Strand 5
D
179 184anti-parallel
Strand 6
D
187 193anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 38first strand
Strand 2
D
72 84anti-parallel
Strand 3
D
312 321anti-parallel
Strand 4
D
105 107anti-parallel
Strand 5
D
129 136anti-parallel
Strand 6
D
139 148anti-parallel
Strand 7
D
151 154anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 38first strand
Strand 2
D
72 84anti-parallel
Strand 3
D
312 321anti-parallel
Strand 4
D
110 113anti-parallel
Strand 5
D
129 136anti-parallel
Strand 6
D
139 148anti-parallel
Strand 7
D
151 154anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 28first strand
Strand 2
E
327 334anti-parallel
Strand 3
E
64 67anti-parallel
Strand 4
E
48 51anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 28first strand
Strand 2
E
327 334anti-parallel
Strand 3
E
91 98anti-parallel
Strand 4
E
167 174anti-parallel
Strand 5
E
179 184anti-parallel
Strand 6
E
187 193anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 38first strand
Strand 2
E
72 84anti-parallel
Strand 3
E
312 321anti-parallel
Strand 4
E
105 107anti-parallel
Strand 5
E
129 136anti-parallel
Strand 6
E
139 148anti-parallel
Strand 7
E
151 154anti-parallel
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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 38first strand
Strand 2
E
72 84anti-parallel
Strand 3
E
312 321anti-parallel
Strand 4
E
110 113anti-parallel
Strand 5
E
129 136anti-parallel
Strand 6
E
139 148anti-parallel
Strand 7
E
151 154anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
24 28first strand
Strand 2
F
327 334anti-parallel
Strand 3
F
64 67anti-parallel
Strand 4
F
48 51anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
24 28first strand
Strand 2
F
327 334anti-parallel
Strand 3
F
91 98anti-parallel
Strand 4
F
167 174anti-parallel
Strand 5
F
179 184anti-parallel
Strand 6
F
187 193anti-parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 38first strand
Strand 2
F
72 84anti-parallel
Strand 3
F
312 321anti-parallel
Strand 4
F
105 107anti-parallel
Strand 5
F
129 136anti-parallel
Strand 6
F
139 148anti-parallel
Strand 7
F
151 154anti-parallel
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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 38first strand
Strand 2
F
72 84anti-parallel
Strand 3
F
312 321anti-parallel
Strand 4
F
110 113anti-parallel
Strand 5
F
129 136anti-parallel
Strand 6
F
139 148anti-parallel
Strand 7
F
151 154anti-parallel
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