Analysis of interatomic Contacts of Structural Units in PDB entry:
5HCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HCV entry

There are 3 chains in PDB entry 5HCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 738HIS 982
B
 PRO 738HIS 982
C
 PRO 738HIS 982
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 5HCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
738 745Right-handed alpha
Helix 2
AA2
A
761 786Right-handed alpha
Helix 3
AA3
A
789 793Right-handed 310
Helix 4
AA4
A
794 805Right-handed alpha
Helix 5
AA5
A
805 823Right-handed alpha
Helix 6
AA6
A
836 844Right-handed alpha
Helix 7
AA7
A
845 863Right-handed alpha
Helix 8
AA8
A
865 878Right-handed alpha
Helix 9
AA9
A
888 907Right-handed alpha
Helix 10
AB1
A
914 948Right-handed alpha
Helix 11
AB2
A
948 953Right-handed alpha
Helix 12
AB3
A
957 973Right-handed alpha
Helix 13
AB4
B
739 745Right-handed alpha
Helix 14
AB5
B
761 786Right-handed alpha
Helix 15
AB6
B
789 793Right-handed 310
Helix 16
AB7
B
794 805Right-handed alpha
Helix 17
AB8
B
805 823Right-handed alpha
Helix 18
AB9
B
836 844Right-handed alpha
Helix 19
AC1
B
845 863Right-handed alpha
Helix 20
AC2
B
865 878Right-handed alpha
Helix 21
AC3
B
888 907Right-handed alpha
Helix 22
AC4
B
918 948Right-handed alpha
Helix 23
AC5
B
948 953Right-handed alpha
Helix 24
AC6
B
957 973Right-handed alpha
Helix 25
AC7
C
739 745Right-handed alpha
Helix 26
AC8
C
761 786Right-handed alpha
Helix 27
AC9
C
789 793Right-handed 310
Helix 28
AD1
C
794 823Right-handed alpha
Helix 29
AD2
C
836 843Right-handed alpha
Helix 30
AD3
C
845 863Right-handed alpha
Helix 31
AD4
C
865 878Right-handed alpha
Helix 32
AD5
C
888 907Right-handed alpha
Helix 33
AD6
C
918 948Right-handed alpha
Helix 34
AD7
C
948 953Right-handed alpha
Helix 35
AD8
C
957 971Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5HCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
827 830first strand
Strand 2
A
833 835anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 882first strand
Strand 2
A
976 978anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
827 830first strand
Strand 2
B
833 835anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
880 881first strand
Strand 2
B
977 978anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
827 830first strand
Strand 2
C
833 835anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
880 881first strand
Strand 2
C
977 978anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il