Analysis of interatomic Contacts of Structural Units in PDB entry:
5HD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HD9 entry

There is 1 chain in PDB entry 5HD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4SER 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5HD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 15Right-handed alpha
Helix 2
AA2
A
28 46Right-handed alpha
Helix 3
AA3
A
55 60Right-handed 310
Helix 4
AA4
A
61 73Right-handed 310
Helix 5
AA5
A
100 105Right-handed alpha
Helix 6
AA6
A
132 145Right-handed alpha
Helix 7
AA7
A
164 171Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5HD9.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
48 53parallel
Strand 5
A
112 118parallel
Strand 6
A
152 156parallel
Strand 7
A
19 22parallel
Strand 8
A
186 189parallel
Strand 9
A
180 182anti-parallel
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