Analysis of interatomic Contacts of Structural Units in PDB entry:
5HDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HDF entry

There are 4 chains in PDB entry 5HDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 61HIS 380
A
 SER 61GLY 375
C
 SER 61LEU 376
D
 SER 61LEU 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5HDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
105 109Right-handed 310
Helix 2
AA2
B
114 119Right-handed alpha
Helix 3
AA3
B
119 127Right-handed alpha
Helix 4
AA4
B
146 150Right-handed 310
Helix 5
AA5
B
151 169Right-handed alpha
Helix 6
AA6
B
185 199Right-handed alpha
Helix 7
AA7
B
214 224Right-handed alpha
Helix 8
AA8
B
227 231Right-handed 310
Helix 9
AA9
B
251 256Right-handed alpha
Helix 10
AB1
B
263 273Right-handed alpha
Helix 11
AB2
B
280 288Right-handed 310
Helix 12
AB3
B
289 295Right-handed alpha
Helix 13
AB4
B
321 330Right-handed alpha
Helix 14
AB5
B
331 333Right-handed 310
Helix 15
AB6
B
350 354Right-handed 310
Helix 16
AB7
B
356 372Right-handed alpha
Helix 17
AB8
A
105 109Right-handed 310
Helix 18
AB9
A
114 119Right-handed alpha
Helix 19
AC1
A
119 127Right-handed alpha
Helix 20
AC2
A
146 150Right-handed 310
Helix 21
AC3
A
151 169Right-handed alpha
Helix 22
AC4
A
185 199Right-handed alpha
Helix 23
AC5
A
214 224Right-handed alpha
Helix 24
AC6
A
227 231Right-handed 310
Helix 25
AC7
A
251 256Right-handed alpha
Helix 26
AC8
A
263 273Right-handed alpha
Helix 27
AC9
A
280 288Right-handed 310
Helix 28
AD1
A
289 295Right-handed alpha
Helix 29
AD2
A
321 330Right-handed alpha
Helix 30
AD3
A
331 333Right-handed 310
Helix 31
AD4
A
350 354Right-handed 310
Helix 32
AD5
A
356 372Right-handed alpha
Helix 33
AD6
C
105 109Right-handed 310
Helix 34
AD7
C
114 119Right-handed alpha
Helix 35
AD8
C
119 127Right-handed alpha
Helix 36
AD9
C
146 150Right-handed 310
Helix 37
AE1
C
151 169Right-handed alpha
Helix 38
AE2
C
185 199Right-handed alpha
Helix 39
AE3
C
214 224Right-handed alpha
Helix 40
AE4
C
227 231Right-handed 310
Helix 41
AE5
C
251 256Right-handed alpha
Helix 42
AE6
C
263 273Right-handed alpha
Helix 43
AE7
C
280 288Right-handed 310
Helix 44
AE8
C
289 295Right-handed alpha
Helix 45
AE9
C
321 330Right-handed alpha
Helix 46
AF1
C
331 333Right-handed 310
Helix 47
AF2
C
350 354Right-handed 310
Helix 48
AF3
C
356 372Right-handed alpha
Helix 49
AF4
D
105 109Right-handed 310
Helix 50
AF5
D
114 119Right-handed alpha
Helix 51
AF6
D
119 127Right-handed alpha
Helix 52
AF7
D
146 150Right-handed 310
Helix 53
AF8
D
151 169Right-handed alpha
Helix 54
AF9
D
185 199Right-handed alpha
Helix 55
AG1
D
214 224Right-handed alpha
Helix 56
AG2
D
227 231Right-handed 310
Helix 57
AG3
D
251 256Right-handed alpha
Helix 58
AG4
D
263 273Right-handed alpha
Helix 59
AG5
D
280 288Right-handed 310
Helix 60
AG6
D
289 295Right-handed alpha
Helix 61
AG7
D
321 330Right-handed alpha
Helix 62
AG8
D
331 333Right-handed 310
Helix 63
AG9
D
350 354Right-handed 310
Helix 64
AH1
D
356 372Right-handed alpha
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There are 8 sheets in PDB entry 5HDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 73first strand
Strand 2
B
76 86anti-parallel
Strand 3
B
130 134anti-parallel
Strand 4
B
94 99parallel
Strand 5
B
178 184parallel
Strand 6
B
203 207parallel
Strand 7
B
300 305parallel
Strand 8
B
339 344parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
277 278anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 73first strand
Strand 2
A
76 87anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
94 99parallel
Strand 5
A
178 184parallel
Strand 6
A
203 207parallel
Strand 7
A
300 305parallel
Strand 8
A
339 344parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
277 278anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 73first strand
Strand 2
C
76 87anti-parallel
Strand 3
C
130 134anti-parallel
Strand 4
C
94 99parallel
Strand 5
C
178 184parallel
Strand 6
C
203 207parallel
Strand 7
C
300 305parallel
Strand 8
C
339 344parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 226first strand
Strand 2
C
244 247anti-parallel
Strand 3
C
277 278anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 71first strand
Strand 2
D
78 87anti-parallel
Strand 3
D
130 134anti-parallel
Strand 4
D
94 99parallel
Strand 5
D
178 184parallel
Strand 6
D
203 207parallel
Strand 7
D
300 305parallel
Strand 8
D
339 344parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
225 226first strand
Strand 2
D
244 247anti-parallel
Strand 3
D
277 278anti-parallel
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