Analysis of interatomic Contacts of Structural Units in PDB entry:
5HDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HDI entry

There are 2 chains in PDB entry 5HDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 37GLN 435
B
 THR 40GLN 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5HDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 49Right-handed alpha
Helix 2
AA2
A
50 61Right-handed alpha
Helix 3
AA3
A
76 85Right-handed alpha
Helix 4
AA4
A
120 124Right-handed 310
Helix 5
AA5
A
127 138Right-handed alpha
Helix 6
AA6
A
141 164Right-handed alpha
Helix 7
AA7
A
171 175Right-handed alpha
Helix 8
AA8
A
178 189Right-handed alpha
Helix 9
AA9
A
194 203Right-handed alpha
Helix 10
AB1
A
203 211Right-handed alpha
Helix 11
AB2
A
214 242Right-handed alpha
Helix 12
AB3
A
246 257Right-handed alpha
Helix 13
AB4
A
261 277Right-handed alpha
Helix 14
AB5
A
277 294Right-handed alpha
Helix 15
AB6
A
294 304Right-handed alpha
Helix 16
AB7
A
307 319Right-handed alpha
Helix 17
AB8
A
349 354Right-handed alpha
Helix 18
AB9
A
381 385Right-handed 310
Helix 19
AC1
A
388 406Right-handed alpha
Helix 20
AC2
B
43 49Right-handed alpha
Helix 21
AC3
B
50 61Right-handed alpha
Helix 22
AC4
B
76 85Right-handed alpha
Helix 23
AC5
B
120 124Right-handed 310
Helix 24
AC6
B
127 138Right-handed alpha
Helix 25
AC7
B
141 164Right-handed alpha
Helix 26
AC8
B
171 175Right-handed alpha
Helix 27
AC9
B
178 189Right-handed alpha
Helix 28
AD1
B
194 211Right-handed alpha
Helix 29
AD2
B
214 242Right-handed alpha
Helix 30
AD3
B
246 257Right-handed alpha
Helix 31
AD4
B
261 277Right-handed alpha
Helix 32
AD5
B
277 294Right-handed alpha
Helix 33
AD6
B
294 304Right-handed alpha
Helix 34
AD7
B
307 319Right-handed alpha
Helix 35
AD8
B
349 354Right-handed alpha
Helix 36
AD9
B
381 385Right-handed 310
Helix 37
AE1
B
388 407Right-handed alpha
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There are 8 sheets in PDB entry 5HDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
345 348parallel
Strand 4
A
325 329anti-parallel
Strand 5
A
90 91anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
106 110anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
430 435anti-parallel
Strand 3
A
409 415anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
338 340anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
71 74anti-parallel
Strand 3
B
345 348parallel
Strand 4
B
325 329anti-parallel
Strand 5
B
90 91anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
106 110anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
430 435anti-parallel
Strand 3
B
409 415anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
338 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il