Analysis of interatomic Contacts of Structural Units in PDB entry:
5HDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HDJ entry

There are 2 chains in PDB entry 5HDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LYS 248
B
 MET 1LYS 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5HDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
23 36Right-handed alpha
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
53 64Right-handed alpha
Helix 5
AA5
A
67 72Right-handed alpha
Helix 6
AA6
A
83 94Right-handed alpha
Helix 7
AA7
A
97 103Right-handed alpha
Helix 8
AA8
A
103 128Right-handed alpha
Helix 9
AA9
A
136 140Right-handed 310
Helix 10
AB1
A
141 149Right-handed alpha
Helix 11
AB2
A
177 181Right-handed alpha
Helix 12
AB3
A
190 213Right-handed alpha
Helix 13
AB4
A
220 230Right-handed alpha
Helix 14
AB5
A
236 244Right-handed alpha
Helix 15
AB6
B
2 11Right-handed alpha
Helix 16
AB7
B
23 36Right-handed alpha
Helix 17
AB8
B
39 43Right-handed 310
Helix 18
AB9
B
53 64Right-handed alpha
Helix 19
AC1
B
67 72Right-handed alpha
Helix 20
AC2
B
83 94Right-handed alpha
Helix 21
AC3
B
97 102Right-handed alpha
Helix 22
AC4
B
103 128Right-handed alpha
Helix 23
AC5
B
136 140Right-handed 310
Helix 24
AC6
B
141 149Right-handed alpha
Helix 25
AC7
B
177 181Right-handed alpha
Helix 26
AC8
B
190 213Right-handed alpha
Helix 27
AC9
B
220 230Right-handed alpha
Helix 28
AD1
B
236 244Right-handed alpha
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There are 2 sheets in PDB entry 5HDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
155 164anti-parallel
Strand 3
A
75 82anti-parallel
Strand 4
A
46 51anti-parallel
Strand 5
B
182 184parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
B
46 51parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
155 164anti-parallel
Strand 5
B
131 135anti-parallel
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