Analysis of interatomic Contacts of Structural Units in PDB entry:
5HDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HDM entry

There are 2 chains in PDB entry 5HDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ILE 434
B
 SER 7ILE 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5HDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
22 23Right-handed 310
Helix 3
AA3
A
24 28Right-handed 310
Helix 4
AA4
A
30 39Right-handed 310
Helix 5
AA5
A
65 69Right-handed 310
Helix 6
AA6
A
77 89Right-handed alpha
Helix 7
AA7
A
98 112Right-handed alpha
Helix 8
AA8
A
123 140Right-handed alpha
Helix 9
AA9
A
155 159Right-handed 310
Helix 10
AB1
A
178 183Right-handed alpha
Helix 11
AB2
A
192 203Right-handed alpha
Helix 12
AB3
A
225 239Right-handed alpha
Helix 13
AB4
A
257 264Right-handed alpha
Helix 14
AB5
A
275 278Right-handed 310
Helix 15
AB6
A
288 293Right-handed alpha
Helix 16
AB7
A
310 325Right-handed alpha
Helix 17
AB8
A
328 351Right-handed alpha
Helix 18
AB9
A
375 380Right-handed alpha
Helix 19
AC1
A
383 397Right-handed alpha
Helix 20
AC2
A
416 432Right-handed alpha
Helix 21
AC3
B
10 21Right-handed alpha
Helix 22
AC4
B
22 23Right-handed 310
Helix 23
AC5
B
24 28Right-handed 310
Helix 24
AC6
B
30 39Right-handed 310
Helix 25
AC7
B
65 69Right-handed 310
Helix 26
AC8
B
77 89Right-handed alpha
Helix 27
AC9
B
98 112Right-handed alpha
Helix 28
AD1
B
123 140Right-handed alpha
Helix 29
AD2
B
155 159Right-handed 310
Helix 30
AD3
B
178 183Right-handed alpha
Helix 31
AD4
B
192 203Right-handed alpha
Helix 32
AD5
B
225 239Right-handed alpha
Helix 33
AD6
B
257 264Right-handed alpha
Helix 34
AD7
B
275 278Right-handed 310
Helix 35
AD8
B
288 293Right-handed alpha
Helix 36
AD9
B
310 325Right-handed alpha
Helix 37
AE1
B
328 351Right-handed alpha
Helix 38
AE2
B
375 380Right-handed alpha
Helix 39
AE3
B
383 397Right-handed alpha
Helix 40
AE4
B
416 432Right-handed alpha
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There are 6 sheets in PDB entry 5HDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
399 400parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
283 287anti-parallel
Strand 3
A
269 273anti-parallel
Strand 4
A
242 246parallel
Strand 5
A
207 212parallel
Strand 6
A
143 148parallel
Strand 7
A
185 189parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 360first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
409 410anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
52 55anti-parallel
Strand 3
B
60 63anti-parallel
Strand 4
B
399 400parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
283 287anti-parallel
Strand 3
B
269 273anti-parallel
Strand 4
B
242 246parallel
Strand 5
B
207 212parallel
Strand 6
B
143 148parallel
Strand 7
B
185 189parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 360first strand
Strand 2
B
363 367anti-parallel
Strand 3
B
409 410anti-parallel
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