Analysis of interatomic Contacts of Structural Units in PDB entry:
5HDR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HDR entry

There are 4 chains in PDB entry 5HDR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 35	TYR 479
B	GLU 35	TYR 479
C	ALA 34	TYR 479
D	GLU 35	TYR 479

There are 72 helices in PDB entry 5HDR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	60	Right-handed alpha
Helix 2	AA2	A	68	72	Right-handed 310
Helix 3	AA3	A	85	87	Right-handed 310
Helix 4	AA4	A	88	93	Right-handed alpha
Helix 5	AA5	A	96	102	Right-handed alpha
Helix 6	AA6	A	103	107	Right-handed 310
Helix 7	AA7	A	113	125	Right-handed alpha
Helix 8	AA8	A	150	154	Right-handed 310
Helix 9	AA9	A	159	171	Right-handed alpha
Helix 10	AB1	A	195	220	Right-handed alpha
Helix 11	AB2	A	233	238	Right-handed alpha
Helix 12	AB3	A	239	254	Right-handed alpha
Helix 13	AB4	A	261	264	Right-handed 310
Helix 14	AB5	A	297	303	Right-handed 310
Helix 15	AB6	A	321	325	Right-handed 310
Helix 16	AB7	A	329	343	Right-handed alpha
Helix 17	AB8	A	360	378	Right-handed alpha
Helix 18	AB9	A	379	381	Right-handed 310
Helix 19	AC1	B	50	60	Right-handed alpha
Helix 20	AC2	B	68	72	Right-handed 310
Helix 21	AC3	B	85	87	Right-handed 310
Helix 22	AC4	B	88	93	Right-handed alpha
Helix 23	AC5	B	96	102	Right-handed alpha
Helix 24	AC6	B	103	107	Right-handed 310
Helix 25	AC7	B	113	125	Right-handed alpha
Helix 26	AC8	B	150	154	Right-handed 310
Helix 27	AC9	B	159	171	Right-handed alpha
Helix 28	AD1	B	195	220	Right-handed alpha
Helix 29	AD2	B	233	238	Right-handed alpha
Helix 30	AD3	B	239	254	Right-handed alpha
Helix 31	AD4	B	261	264	Right-handed 310
Helix 32	AD5	B	297	303	Right-handed 310
Helix 33	AD6	B	321	325	Right-handed 310
Helix 34	AD7	B	329	343	Right-handed alpha
Helix 35	AD8	B	360	378	Right-handed alpha
Helix 36	AD9	B	379	381	Right-handed 310
Helix 37	AE1	C	50	60	Right-handed alpha
Helix 38	AE2	C	68	72	Right-handed 310
Helix 39	AE3	C	85	87	Right-handed 310
Helix 40	AE4	C	88	93	Right-handed alpha
Helix 41	AE5	C	96	102	Right-handed alpha
Helix 42	AE6	C	103	107	Right-handed 310
Helix 43	AE7	C	113	125	Right-handed alpha
Helix 44	AE8	C	150	154	Right-handed 310
Helix 45	AE9	C	159	171	Right-handed alpha
Helix 46	AF1	C	195	220	Right-handed alpha
Helix 47	AF2	C	233	238	Right-handed alpha
Helix 48	AF3	C	239	254	Right-handed alpha
Helix 49	AF4	C	261	264	Right-handed 310
Helix 50	AF5	C	297	303	Right-handed 310
Helix 51	AF6	C	321	325	Right-handed 310
Helix 52	AF7	C	329	343	Right-handed alpha
Helix 53	AF8	C	360	378	Right-handed alpha
Helix 54	AF9	C	379	381	Right-handed 310
Helix 55	AG1	D	50	60	Right-handed alpha
Helix 56	AG2	D	68	72	Right-handed 310
Helix 57	AG3	D	85	87	Right-handed 310
Helix 58	AG4	D	88	93	Right-handed alpha
Helix 59	AG5	D	96	102	Right-handed alpha
Helix 60	AG6	D	103	107	Right-handed 310
Helix 61	AG7	D	113	125	Right-handed alpha
Helix 62	AG8	D	150	154	Right-handed 310
Helix 63	AG9	D	159	171	Right-handed alpha
Helix 64	AH1	D	195	220	Right-handed alpha
Helix 65	AH2	D	233	238	Right-handed alpha
Helix 66	AH3	D	239	254	Right-handed alpha
Helix 67	AH4	D	261	264	Right-handed 310
Helix 68	AH5	D	297	303	Right-handed 310
Helix 69	AH6	D	321	325	Right-handed 310
Helix 70	AH7	D	329	343	Right-handed alpha
Helix 71	AH8	D	360	378	Right-handed alpha
Helix 72	AH9	D	379	381	Right-handed 310

There are 16 sheets in PDB entry 5HDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	225	229	parallel
Strand 3	A	174	180	parallel
Strand 4	A	128	134	parallel
Strand 5	A	61	65	parallel
Strand 6	A	346	351	parallel
Strand 7	A	306	309	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	80	81	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	399	first strand
Strand 2	A	404	409	anti-parallel
Strand 3	A	463	471	anti-parallel
Strand 4	A	426	433	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	449	453	anti-parallel
Strand 3	A	442	446	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	225	229	parallel
Strand 3	B	174	180	parallel
Strand 4	B	128	134	parallel
Strand 5	B	61	65	parallel
Strand 6	B	346	351	parallel
Strand 7	B	306	309	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	80	81	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	399	first strand
Strand 2	B	405	409	anti-parallel
Strand 3	B	463	471	anti-parallel
Strand 4	B	426	433	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	449	453	anti-parallel
Strand 3	B	442	446	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	225	229	parallel
Strand 3	C	174	180	parallel
Strand 4	C	128	134	parallel
Strand 5	C	61	65	parallel
Strand 6	C	346	351	parallel
Strand 7	C	306	309	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	80	81	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	399	first strand
Strand 2	C	405	409	anti-parallel
Strand 3	C	463	470	anti-parallel
Strand 4	C	427	433	anti-parallel
Strand 5	C	439	440	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	C	449	453	anti-parallel
Strand 3	C	442	446	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	225	229	parallel
Strand 3	D	174	180	parallel
Strand 4	D	128	134	parallel
Strand 5	D	61	65	parallel
Strand 6	D	346	351	parallel
Strand 7	D	306	309	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	80	81	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	405	409	anti-parallel
Strand 3	D	463	471	anti-parallel
Strand 4	D	426	433	anti-parallel
Strand 5	D	439	440	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	421	first strand
Strand 2	D	449	453	anti-parallel
Strand 3	D	442	446	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HDR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HDR