Analysis of interatomic Contacts of Structural Units in PDB entry:
5HE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HE1 entry

There are 3 chains in PDB entry 5HE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 29	PRO 668
B	SER 2	ASN 340
G	ALA 7	SER 68

There are 31 helices in PDB entry 5HE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	49	Right-handed alpha
Helix 2	AA2	A	54	60	Right-handed alpha
Helix 3	AA3	A	61	76	Right-handed alpha
Helix 4	AA4	A	79	95	Right-handed alpha
Helix 5	AA5	A	97	113	Right-handed alpha
Helix 6	AA6	A	113	120	Right-handed alpha
Helix 7	AA7	A	125	138	Right-handed alpha
Helix 8	AA8	A	146	158	Right-handed alpha
Helix 9	AA9	A	159	168	Right-handed alpha
Helix 10	AB1	A	169	183	Right-handed alpha
Helix 11	AB2	A	224	231	Right-handed alpha
Helix 12	AB3	A	233	247	Right-handed alpha
Helix 13	AB4	A	279	287	Right-handed alpha
Helix 14	AB5	A	290	311	Right-handed alpha
Helix 15	AB6	A	358	363	Right-handed alpha
Helix 16	AB7	A	370	387	Right-handed alpha
Helix 17	AB8	A	399	408	Right-handed alpha
Helix 18	AB9	A	418	429	Right-handed alpha
Helix 19	AC1	A	432	436	Right-handed 310
Helix 20	AC2	A	443	449	Right-handed alpha
Helix 21	AC3	A	450	454	Right-handed 310
Helix 22	AC4	A	457	463	Right-handed alpha
Helix 23	AC5	A	499	504	Right-handed alpha
Helix 24	AC6	A	513	523	Right-handed alpha
Helix 25	AC7	A	525	545	Right-handed alpha
Helix 26	AC8	A	570	574	Right-handed 310
Helix 27	AC9	A	636	659	Right-handed alpha
Helix 28	AD1	B	3	24	Right-handed alpha
Helix 29	AD2	B	29	34	Right-handed alpha
Helix 30	AD3	G	8	24	Right-handed alpha
Helix 31	AD4	G	29	46	Right-handed alpha

There are 11 sheets in PDB entry 5HE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	199	first strand
Strand 2	A	203	210	anti-parallel
Strand 3	A	216	223	anti-parallel
Strand 4	A	266	271	anti-parallel
Strand 5	A	257	262	anti-parallel
Strand 6	A	511	512	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	323	325	anti-parallel
Strand 3	A	331	333	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	340	341	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	602	first strand
Strand 2	A	587	591	anti-parallel
Strand 3	A	576	583	anti-parallel
Strand 4	A	561	568	anti-parallel
Strand 5	A	629	633	anti-parallel
Strand 6	A	617	624	anti-parallel
Strand 7	A	606	614	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HE1