Analysis of interatomic Contacts of Structural Units in PDB entry:
5HE8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HE8 entry

There are 4 chains in PDB entry 5HE8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 138	GLY 300
B	LEU 138	GLU 301
C	ASP 136	ASN 306
D	ALA 135	SER 264

There are101 helices in PDB entry 5HE8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	139	154	Right-handed alpha
Helix 2	AA2	A	169	183	Right-handed alpha
Helix 3	AA3	A	193	201	Right-handed alpha
Helix 4	AA4	A	202	204	Right-handed 310
Helix 5	AA5	A	208	218	Right-handed alpha
Helix 6	AA6	A	233	240	Right-handed alpha
Helix 7	AA7	A	240	251	Right-handed alpha
Helix 8	AA8	A	262	272	Right-handed alpha
Helix 9	AA9	A	278	292	Right-handed alpha
Helix 10	AB1	B	139	153	Right-handed alpha
Helix 11	AB2	B	169	184	Right-handed alpha
Helix 12	AB3	B	193	201	Right-handed alpha
Helix 13	AB4	B	208	218	Right-handed alpha
Helix 14	AB5	B	233	240	Right-handed alpha
Helix 15	AB6	B	240	251	Right-handed alpha
Helix 16	AB7	B	262	272	Right-handed alpha
Helix 17	AB8	B	278	292	Right-handed alpha
Helix 18	AB9	C	139	153	Right-handed alpha
Helix 19	AC1	C	169	184	Right-handed alpha
Helix 20	AC2	C	193	201	Right-handed alpha
Helix 21	AC3	C	202	207	Right-handed 310
Helix 22	AC4	C	208	218	Right-handed alpha
Helix 23	AC5	C	233	240	Right-handed alpha
Helix 24	AC6	C	240	251	Right-handed alpha
Helix 25	AC7	C	262	271	Right-handed alpha
Helix 26	AC8	C	278	292	Right-handed alpha
Helix 27	AC9	D	139	153	Right-handed alpha
Helix 28	AD1	D	169	184	Right-handed alpha
Helix 29	AD2	D	193	201	Right-handed alpha
Helix 30	AD3	D	202	204	Right-handed 310
Helix 31	AD4	D	209	218	Right-handed alpha
Helix 32	AD5	D	233	240	Right-handed alpha
Helix 33	AD6	D	240	251	Right-handed alpha
Helix 34	AD7	D	262	271	Right-handed alpha
Helix 35	AD8	D	278	292	Right-handed alpha
Helix 36	AD9	E	139	153	Right-handed alpha
Helix 37	AE1	E	169	184	Right-handed alpha
Helix 38	AE2	E	193	201	Right-handed alpha
Helix 39	AE3	E	209	218	Right-handed alpha
Helix 40	AE4	E	233	240	Right-handed alpha
Helix 41	AE5	E	240	251	Right-handed alpha
Helix 42	AE6	E	262	271	Right-handed alpha
Helix 43	AE7	E	278	292	Right-handed alpha
Helix 44	AE8	F	139	153	Right-handed alpha
Helix 45	AE9	F	169	183	Right-handed alpha
Helix 46	AF1	F	193	201	Right-handed alpha
Helix 47	AF2	F	209	218	Right-handed alpha
Helix 48	AF3	F	233	240	Right-handed alpha
Helix 49	AF4	F	240	251	Right-handed alpha
Helix 50	AF5	F	262	271	Right-handed alpha
Helix 51	AF6	F	278	292	Right-handed alpha
Helix 52	AF7	G	139	153	Right-handed alpha
Helix 53	AF8	G	169	184	Right-handed alpha
Helix 54	AF9	G	193	201	Right-handed alpha
Helix 55	AG1	G	202	204	Right-handed 310
Helix 56	AG2	G	209	218	Right-handed alpha
Helix 57	AG3	G	233	239	Right-handed alpha
Helix 58	AG4	G	240	251	Right-handed alpha
Helix 59	AG5	G	262	271	Right-handed alpha
Helix 60	AG6	G	278	292	Right-handed alpha
Helix 61	AG7	H	139	153	Right-handed alpha
Helix 62	AG8	H	169	184	Right-handed alpha
Helix 63	AG9	H	193	201	Right-handed alpha
Helix 64	AH1	H	209	218	Right-handed alpha
Helix 65	AH2	H	233	240	Right-handed alpha
Helix 66	AH3	H	240	251	Right-handed alpha
Helix 67	AH4	H	262	271	Right-handed alpha
Helix 68	AH5	H	278	292	Right-handed alpha
Helix 69	AH6	I	139	153	Right-handed alpha
Helix 70	AH7	I	169	184	Right-handed alpha
Helix 71	AH8	I	193	201	Right-handed alpha
Helix 72	AH9	I	202	204	Right-handed 310
Helix 73	AI1	I	209	218	Right-handed alpha
Helix 74	AI2	I	233	240	Right-handed alpha
Helix 75	AI3	I	240	251	Right-handed alpha
Helix 76	AI4	I	262	271	Right-handed alpha
Helix 77	AI5	I	278	292	Right-handed alpha
Helix 78	AI6	J	139	153	Right-handed alpha
Helix 79	AI7	J	169	184	Right-handed alpha
Helix 80	AI8	J	193	201	Right-handed alpha
Helix 81	AI9	J	209	218	Right-handed alpha
Helix 82	AJ1	J	233	240	Right-handed alpha
Helix 83	AJ2	J	240	251	Right-handed alpha
Helix 84	AJ3	J	262	271	Right-handed alpha
Helix 85	AJ4	J	278	292	Right-handed alpha
Helix 86	AJ5	L	140	153	Right-handed alpha
Helix 87	AJ6	L	169	184	Right-handed alpha
Helix 88	AJ7	L	193	202	Right-handed alpha
Helix 89	AJ8	L	208	217	Right-handed alpha
Helix 90	AJ9	L	233	240	Right-handed alpha
Helix 91	AK1	L	240	251	Right-handed alpha
Helix 92	AK2	L	262	272	Right-handed alpha
Helix 93	AK3	L	280	292	Right-handed alpha
Helix 94	AK4	K	139	154	Right-handed alpha
Helix 95	AK5	K	169	184	Right-handed alpha
Helix 96	AK6	K	193	201	Right-handed alpha
Helix 97	AK7	K	209	218	Right-handed alpha
Helix 98	AK8	K	233	240	Right-handed alpha
Helix 99	AK9	K	240	251	Right-handed alpha
Helix 100	AL1	K	262	271	Right-handed alpha
Helix 101	AL2	K	278	292	Right-handed alpha

There are 21 sheets in PDB entry 5HE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	222	227	parallel
Strand 3	A	255	259	parallel
Strand 4	A	159	163	parallel
Strand 5	A	293	297	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	222	227	parallel
Strand 3	B	255	259	parallel
Strand 4	B	159	163	parallel
Strand 5	B	293	297	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	192	first strand
Strand 2	C	222	225	parallel
Strand 3	C	255	259	parallel
Strand 4	C	159	163	parallel
Strand 5	C	293	297	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	273	first strand
Strand 2	C	276	277	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	192	first strand
Strand 2	D	222	225	parallel
Strand 3	D	255	259	parallel
Strand 4	D	159	163	parallel
Strand 5	D	293	297	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	276	277	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	192	first strand
Strand 2	E	222	225	parallel
Strand 3	E	255	259	parallel
Strand 4	E	159	163	parallel
Strand 5	E	293	297	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	273	first strand
Strand 2	E	276	277	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	192	first strand
Strand 2	F	222	225	parallel
Strand 3	F	255	259	parallel
Strand 4	F	159	163	parallel
Strand 5	F	293	297	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	273	first strand
Strand 2	F	276	277	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	192	first strand
Strand 2	G	222	225	parallel
Strand 3	G	255	259	parallel
Strand 4	G	159	163	parallel
Strand 5	G	293	297	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	273	first strand
Strand 2	G	276	277	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	189	192	first strand
Strand 2	H	222	225	parallel
Strand 3	H	255	259	parallel
Strand 4	H	159	163	parallel
Strand 5	H	293	297	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	272	273	first strand
Strand 2	H	276	277	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	189	192	first strand
Strand 2	I	222	225	parallel
Strand 3	I	255	259	parallel
Strand 4	I	159	163	parallel
Strand 5	I	293	297	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	272	273	first strand
Strand 2	I	276	277	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	189	192	first strand
Strand 2	J	222	227	parallel
Strand 3	J	255	259	parallel
Strand 4	J	159	163	parallel
Strand 5	J	293	297	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	272	273	first strand
Strand 2	J	276	277	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	189	192	first strand
Strand 2	L	222	227	parallel
Strand 3	L	255	259	parallel
Strand 4	L	159	163	parallel
Strand 5	L	293	297	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	189	192	first strand
Strand 2	K	222	225	parallel
Strand 3	K	255	259	parallel
Strand 4	K	159	163	parallel
Strand 5	K	293	297	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	272	273	first strand
Strand 2	K	276	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HE8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HE8