Analysis of interatomic Contacts of Structural Units in PDB entry:
5HEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HEE entry

There are 2 chains in PDB entry 5HEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 262
B
 MET 1GLU 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5HEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
19 36Right-handed alpha
Helix 3
AA3
A
82 96Right-handed alpha
Helix 4
AA4
A
119 127Right-handed alpha
Helix 5
AA5
A
143 161Right-handed alpha
Helix 6
AA6
A
187 202Right-handed alpha
Helix 7
AA7
A
204 211Right-handed 310
Helix 8
AA8
A
212 220Right-handed alpha
Helix 9
AA9
A
223 237Right-handed alpha
Helix 10
AB1
B
11 16Right-handed 310
Helix 11
AB2
B
19 36Right-handed alpha
Helix 12
AB3
B
82 96Right-handed alpha
Helix 13
AB4
B
119 126Right-handed alpha
Helix 14
AB5
B
143 161Right-handed alpha
Helix 15
AB6
B
186 202Right-handed alpha
Helix 16
AB7
B
204 211Right-handed 310
Helix 17
AB8
B
212 220Right-handed alpha
Helix 18
AB9
B
223 237Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5HEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 247first strand
Strand 2
A
254 261anti-parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
165 170parallel
Strand 5
A
41 45parallel
Strand 6
A
133 137parallel
Strand 7
A
56 59anti-parallel
Strand 8
A
100 105parallel
Strand 9
B
50 51anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
B
100 105anti-parallel
Strand 3
B
56 59parallel
Strand 4
B
133 137anti-parallel
Strand 5
B
41 45parallel
Strand 6
B
165 170parallel
Strand 7
B
2 8parallel
Strand 8
B
254 261anti-parallel
Strand 9
B
239 247anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
63 68anti-parallel
Strand 3
A
114 118parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
63 68anti-parallel
Strand 3
B
114 118parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il