Analysis of interatomic Contacts of Structural Units in PDB entry:
5HES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HES entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 5HES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6HIS 160
A
 GLY 168ARG 299
B
 SER 7GLU 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5HES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
37 39Right-handed 310
Helix 4
AA4
A
52 58Right-handed alpha
Helix 5
AA5
A
90 95Right-handed alpha
Helix 6
AA6
A
96 102Right-handed 310
Helix 7
AA7
A
103 124Right-handed alpha
Helix 8
AA8
A
135 137Right-handed 310
Helix 9
AA9
A
169 173Right-handed 310
Helix 10
AB1
A
174 179Right-handed alpha
Helix 11
AB2
A
185 202Right-handed alpha
Helix 12
AB3
A
210 221Right-handed alpha
Helix 13
AB4
A
232 243Right-handed alpha
Helix 14
AB5
A
246 250Right-handed 310
Helix 15
AB6
A
252 266Right-handed alpha
Helix 16
AB7
A
268 279Right-handed alpha
Helix 17
AB8
A
279 299Right-handed alpha
Helix 18
AB9
B
12 14Right-handed 310
Helix 19
AC1
B
23 26Right-handed 310
Helix 20
AC2
B
52 60Right-handed 310
Helix 21
AC3
B
89 95Right-handed alpha
Helix 22
AC4
B
96 102Right-handed 310
Helix 23
AC5
B
103 124Right-handed alpha
Helix 24
AC6
B
135 137Right-handed 310
Helix 25
AC7
B
169 173Right-handed 310
Helix 26
AC8
B
174 179Right-handed alpha
Helix 27
AC9
B
185 202Right-handed alpha
Helix 28
AD1
B
210 222Right-handed alpha
Helix 29
AD2
B
232 244Right-handed alpha
Helix 30
AD3
B
246 250Right-handed 310
Helix 31
AD4
B
252 264Right-handed alpha
Helix 32
AD5
B
268 278Right-handed alpha
Helix 33
AD6
B
279 297Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5HES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
40 47anti-parallel
Strand 4
A
77 83anti-parallel
Strand 5
A
68 74anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
139 141anti-parallel
Strand 3
A
147 149anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
68 74parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
40 47anti-parallel
Strand 5
B
30 35anti-parallel
Strand 6
B
16 21anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
147 149anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il