Analysis of interatomic Contacts of Structural Units in PDB entry:
5HFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HFJ entry

There are 7 chains in PDB entry 5HFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 231
B	MET 1	LEU 229
C	MET 1	LEU 231
D	MET 1	LEU 231
E	MET 1	ASN 230
F	MET 1	LEU 231
G	MET 1	ASP 57

There are 49 helices in PDB entry 5HFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	19	Right-handed alpha
Helix 2	AA2	A	63	70	Right-handed alpha
Helix 3	AA3	A	87	98	Right-handed alpha
Helix 4	AA4	A	174	185	Right-handed alpha
Helix 5	AA5	A	199	208	Right-handed alpha
Helix 6	AA6	A	218	229	Right-handed alpha
Helix 7	AA7	B	8	19	Right-handed alpha
Helix 8	AA8	B	63	70	Right-handed alpha
Helix 9	AA9	B	87	98	Right-handed alpha
Helix 10	AB1	B	173	185	Right-handed alpha
Helix 11	AB2	B	200	208	Right-handed alpha
Helix 12	AB3	B	218	229	Right-handed alpha
Helix 13	AB4	C	8	19	Right-handed alpha
Helix 14	AB5	C	60	70	Right-handed alpha
Helix 15	AB6	C	87	98	Right-handed alpha
Helix 16	AB7	C	173	185	Right-handed alpha
Helix 17	AB8	C	200	208	Right-handed alpha
Helix 18	AB9	C	218	230	Right-handed alpha
Helix 19	AC1	D	8	19	Right-handed alpha
Helix 20	AC2	D	63	70	Right-handed alpha
Helix 21	AC3	D	87	98	Right-handed alpha
Helix 22	AC4	D	117	121	Right-handed 310
Helix 23	AC5	D	174	185	Right-handed alpha
Helix 24	AC6	D	200	208	Right-handed alpha
Helix 25	AC7	D	218	229	Right-handed alpha
Helix 26	AC8	E	8	19	Right-handed alpha
Helix 27	AC9	E	60	70	Right-handed alpha
Helix 28	AD1	E	87	98	Right-handed alpha
Helix 29	AD2	E	173	185	Right-handed alpha
Helix 30	AD3	E	200	208	Right-handed alpha
Helix 31	AD4	E	218	229	Right-handed alpha
Helix 32	AD5	F	8	19	Right-handed alpha
Helix 33	AD6	F	60	70	Right-handed alpha
Helix 34	AD7	F	87	98	Right-handed alpha
Helix 35	AD8	F	173	185	Right-handed alpha
Helix 36	AD9	F	200	208	Right-handed alpha
Helix 37	AE1	F	218	229	Right-handed alpha
Helix 38	AE2	G	8	19	Right-handed alpha
Helix 39	AE3	G	63	70	Right-handed alpha
Helix 40	AE4	G	87	98	Right-handed alpha
Helix 41	AE5	G	173	185	Right-handed alpha
Helix 42	AE6	G	201	208	Right-handed alpha
Helix 43	AE7	G	218	229	Right-handed alpha
Helix 44	AE8	H	8	19	Right-handed alpha
Helix 45	AE9	H	60	70	Right-handed alpha
Helix 46	AF1	H	87	98	Right-handed alpha
Helix 47	AF2	H	173	185	Right-handed alpha
Helix 48	AF3	H	200	208	Right-handed alpha
Helix 49	AF4	H	218	229	Right-handed alpha

There are 8 sheets in PDB entry 5HFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	212	216	parallel
Strand 3	A	191	193	parallel
Strand 4	A	23	28	parallel
Strand 5	A	73	83	parallel
Strand 6	A	126	134	anti-parallel
Strand 7	A	100	110	anti-parallel
Strand 8	A	153	155	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	212	216	parallel
Strand 3	B	191	193	parallel
Strand 4	B	23	28	parallel
Strand 5	B	73	83	parallel
Strand 6	B	126	134	anti-parallel
Strand 7	B	100	109	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	212	216	parallel
Strand 3	C	191	193	parallel
Strand 4	C	23	28	parallel
Strand 5	C	73	83	parallel
Strand 6	C	126	134	anti-parallel
Strand 7	C	100	109	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	212	216	parallel
Strand 3	D	191	193	parallel
Strand 4	D	23	28	parallel
Strand 5	D	73	83	parallel
Strand 6	D	126	134	anti-parallel
Strand 7	D	100	110	anti-parallel
Strand 8	D	154	155	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	212	216	parallel
Strand 3	E	191	193	parallel
Strand 4	E	23	28	parallel
Strand 5	E	73	83	parallel
Strand 6	E	126	134	anti-parallel
Strand 7	E	100	110	anti-parallel
Strand 8	E	154	155	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	212	216	parallel
Strand 3	F	191	193	parallel
Strand 4	F	23	28	parallel
Strand 5	F	73	83	parallel
Strand 6	F	126	134	anti-parallel
Strand 7	F	100	109	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	212	216	parallel
Strand 3	G	191	193	parallel
Strand 4	G	23	28	parallel
Strand 5	G	73	83	parallel
Strand 6	G	126	134	anti-parallel
Strand 7	G	100	109	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	212	216	parallel
Strand 3	H	191	193	parallel
Strand 4	H	23	28	parallel
Strand 5	H	73	82	parallel
Strand 6	H	126	134	anti-parallel
Strand 7	H	100	110	anti-parallel
Strand 8	H	153	155	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HFJ