Analysis of interatomic Contacts of Structural Units in PDB entry:
5HFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HFK entry

There are 2 chains in PDB entry 5HFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 207
B
 MET 1LYS 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5HFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
32 39Right-handed 310
Helix 3
AA3
A
40 45Right-handed alpha
Helix 4
AA4
A
71 84Right-handed alpha
Helix 5
AA5
A
90 107Right-handed alpha
Helix 6
AA6
A
107 121Right-handed alpha
Helix 7
AA7
A
126 149Right-handed alpha
Helix 8
AA8
A
160 171Right-handed alpha
Helix 9
AA9
A
172 176Right-handed 310
Helix 10
AB1
A
179 182Right-handed 310
Helix 11
AB2
A
183 195Right-handed alpha
Helix 12
AB3
A
196 206Right-handed alpha
Helix 13
AB4
B
9 23Right-handed alpha
Helix 14
AB5
B
32 39Right-handed 310
Helix 15
AB6
B
40 45Right-handed alpha
Helix 16
AB7
B
71 84Right-handed alpha
Helix 17
AB8
B
90 107Right-handed alpha
Helix 18
AB9
B
107 121Right-handed alpha
Helix 19
AC1
B
126 149Right-handed alpha
Helix 20
AC2
B
160 171Right-handed alpha
Helix 21
AC3
B
172 177Right-handed 310
Helix 22
AC4
B
179 182Right-handed 310
Helix 23
AC5
B
183 195Right-handed alpha
Helix 24
AC6
B
196 205Right-handed alpha
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There are 2 sheets in PDB entry 5HFK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
2 6parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
67 70anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
2 6parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
67 70anti-parallel
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