Analysis of interatomic Contacts of Structural Units in PDB entry:
5HFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HFT entry

There are 4 chains in PDB entry 5HFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 324
C
 SER 4SER 324
B
 THR 342TYR 528
D
 THR 342TYR 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5HFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
32 48Right-handed alpha
Helix 3
AA3
A
106 122Right-handed alpha
Helix 4
AA4
A
127 132Right-handed alpha
Helix 5
AA5
A
132 142Right-handed alpha
Helix 6
AA6
A
146 156Right-handed alpha
Helix 7
AA7
A
156 161Right-handed alpha
Helix 8
AA8
A
165 171Right-handed alpha
Helix 9
AA9
A
185 199Right-handed alpha
Helix 10
AB1
A
201 206Right-handed alpha
Helix 11
AB2
A
206 220Right-handed alpha
Helix 12
AB3
A
224 230Right-handed alpha
Helix 13
AB4
A
253 265Right-handed alpha
Helix 14
AB5
A
278 283Right-handed alpha
Helix 15
AB6
A
286 296Right-handed alpha
Helix 16
AB7
A
314 319Right-handed alpha
Helix 17
AB8
A
320 320Right-handed 310
Helix 18
AB9
A
322 324Right-handed 310
Helix 19
AC1
C
16 29Right-handed alpha
Helix 20
AC2
C
32 48Right-handed alpha
Helix 21
AC3
C
84 88Right-handed 310
Helix 22
AC4
C
106 122Right-handed alpha
Helix 23
AC5
C
127 142Right-handed alpha
Helix 24
AC6
C
146 156Right-handed alpha
Helix 25
AC7
C
156 161Right-handed alpha
Helix 26
AC8
C
165 171Right-handed alpha
Helix 27
AC9
C
185 199Right-handed alpha
Helix 28
AD1
C
201 206Right-handed alpha
Helix 29
AD2
C
206 220Right-handed alpha
Helix 30
AD3
C
224 230Right-handed alpha
Helix 31
AD4
C
253 262Right-handed alpha
Helix 32
AD5
C
278 291Right-handed alpha
Helix 33
AD6
B
381 385Right-handed 310
Helix 34
AD7
B
429 443Right-handed alpha
Helix 35
AD8
B
445 452Right-handed alpha
Helix 36
AD9
D
381 385Right-handed 310
Helix 37
AE1
D
430 440Right-handed alpha
Helix 38
AE2
D
445 452Right-handed alpha
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There are 7 sheets in PDB entry 5HFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
B
513 516anti-parallel
Strand 3
B
501 507anti-parallel
Strand 4
B
417 423anti-parallel
Strand 5
B
408 412anti-parallel
Strand 6
A
246 250anti-parallel
Strand 7
A
239 243anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
57 63anti-parallel
Strand 3
B
354 360anti-parallel
Strand 4
B
343 348anti-parallel
Strand 5
A
10 14anti-parallel
Strand 6
B
524 528anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
182 183anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
D
513 516anti-parallel
Strand 3
D
501 507anti-parallel
Strand 4
D
417 423anti-parallel
Strand 5
D
408 412anti-parallel
Strand 6
C
246 250anti-parallel
Strand 7
C
239 243anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 74first strand
Strand 2
C
57 63anti-parallel
Strand 3
D
354 360anti-parallel
Strand 4
D
343 348anti-parallel
Strand 5
C
10 14anti-parallel
Strand 6
D
524 528anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
182 183anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 471first strand
Strand 2
B
491 492parallel
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