Analysis of interatomic Contacts of Structural Units in PDB entry:
5HGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HGJ entry

There are 2 chains in PDB entry 5HGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 32GLU 225
B
 GLN 332LEU 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5HGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 60Right-handed alpha
Helix 2
AA2
A
91 101Right-handed alpha
Helix 3
AA3
A
111 122Right-handed alpha
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
148 150Right-handed 310
Helix 6
AA6
A
151 162Right-handed alpha
Helix 7
AA7
A
172 178Right-handed alpha
Helix 8
AA8
A
182 193Right-handed alpha
Helix 9
AA9
A
196 200Right-handed alpha
Helix 10
AB1
A
206 212Right-handed 310
Helix 11
AB2
A
213 222Right-handed alpha
Helix 12
AB3
B
348 360Right-handed alpha
Helix 13
AB4
B
391 401Right-handed alpha
Helix 14
AB5
B
411 422Right-handed alpha
Helix 15
AB6
B
425 429Right-handed 310
Helix 16
AB7
B
448 450Right-handed 310
Helix 17
AB8
B
451 462Right-handed alpha
Helix 18
AB9
B
472 478Right-handed alpha
Helix 19
AC1
B
482 493Right-handed alpha
Helix 20
AC2
B
496 500Right-handed alpha
Helix 21
AC3
B
506 512Right-handed 310
Helix 22
AC4
B
513 523Right-handed alpha
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There are 2 sheets in PDB entry 5HGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
70 76anti-parallel
Strand 3
A
33 40parallel
Strand 4
A
135 142parallel
Strand 5
A
164 171parallel
Strand 6
A
201 204parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 384first strand
Strand 2
B
370 376anti-parallel
Strand 3
B
333 340parallel
Strand 4
B
435 442parallel
Strand 5
B
464 471parallel
Strand 6
B
501 504parallel
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