Analysis of interatomic Contacts of Structural Units in PDB entry:
5HGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HGQ entry

There are 3 chains in PDB entry 5HGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	ALA 505
D	GLN 6	ALA 505
B	PRO 5	LYS 379

There are 61 helices in PDB entry 5HGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	21	Right-handed alpha
Helix 2	AA2	A	36	45	Right-handed alpha
Helix 3	AA3	A	93	95	Right-handed 310
Helix 4	AA4	A	161	169	Right-handed alpha
Helix 5	AA5	A	171	193	Right-handed alpha
Helix 6	AA6	A	232	242	Right-handed alpha
Helix 7	AA7	A	278	298	Right-handed alpha
Helix 8	AA8	A	329	338	Right-handed alpha
Helix 9	AA9	A	348	355	Right-handed alpha
Helix 10	AB1	A	372	384	Right-handed alpha
Helix 11	AB2	A	385	389	Right-handed 310
Helix 12	AB3	A	466	472	Right-handed alpha
Helix 13	AB4	A	484	493	Right-handed alpha
Helix 14	AB5	A	496	500	Right-handed 310
Helix 15	AB6	D	7	22	Right-handed alpha
Helix 16	AB7	D	36	45	Right-handed alpha
Helix 17	AB8	D	93	95	Right-handed 310
Helix 18	AB9	D	100	108	Right-handed alpha
Helix 19	AC1	D	156	161	Right-handed alpha
Helix 20	AC2	D	161	169	Right-handed alpha
Helix 21	AC3	D	171	193	Right-handed alpha
Helix 22	AC4	D	232	242	Right-handed alpha
Helix 23	AC5	D	278	299	Right-handed alpha
Helix 24	AC6	D	329	338	Right-handed alpha
Helix 25	AC7	D	348	355	Right-handed alpha
Helix 26	AC8	D	372	381	Right-handed alpha
Helix 27	AC9	D	385	389	Right-handed 310
Helix 28	AD1	D	465	472	Right-handed alpha
Helix 29	AD2	D	484	493	Right-handed alpha
Helix 30	AD3	D	496	500	Right-handed 310
Helix 31	AD4	B	6	22	Right-handed alpha
Helix 32	AD5	B	36	43	Right-handed alpha
Helix 33	AD6	B	91	95	Right-handed 310
Helix 34	AD7	B	100	106	Right-handed alpha
Helix 35	AD8	B	156	161	Right-handed alpha
Helix 36	AD9	B	161	169	Right-handed alpha
Helix 37	AE1	B	169	193	Right-handed alpha
Helix 38	AE2	B	232	242	Right-handed alpha
Helix 39	AE3	B	278	299	Right-handed alpha
Helix 40	AE4	B	329	338	Right-handed alpha
Helix 41	AE5	B	347	357	Right-handed alpha
Helix 42	AE6	B	372	385	Right-handed alpha
Helix 43	AE7	B	386	389	Right-handed 310
Helix 44	AE8	B	463	472	Right-handed alpha
Helix 45	AE9	B	484	493	Right-handed alpha
Helix 46	AF1	B	496	500	Right-handed 310
Helix 47	AF2	C	8	21	Right-handed alpha
Helix 48	AF3	C	36	45	Right-handed alpha
Helix 49	AF4	C	93	95	Right-handed 310
Helix 50	AF5	C	100	108	Right-handed alpha
Helix 51	AF6	C	161	169	Right-handed alpha
Helix 52	AF7	C	171	191	Right-handed alpha
Helix 53	AF8	C	232	242	Right-handed alpha
Helix 54	AF9	C	278	298	Right-handed alpha
Helix 55	AG1	C	329	338	Right-handed alpha
Helix 56	AG2	C	349	355	Right-handed alpha
Helix 57	AG3	C	372	384	Right-handed alpha
Helix 58	AG4	C	385	389	Right-handed 310
Helix 59	AG5	C	466	472	Right-handed alpha
Helix 60	AG6	C	484	493	Right-handed alpha
Helix 61	AG7	C	496	500	Right-handed 310

There are 15 sheets in PDB entry 5HGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	113	122	anti-parallel
Strand 3	A	128	139	anti-parallel
Strand 4	A	84	91	parallel
Strand 5	A	74	81	anti-parallel
Strand 6	A	58	68	anti-parallel
Strand 7	A	113	122	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	246	254	parallel
Strand 3	A	266	275	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	426	433	anti-parallel
Strand 6	A	419	423	anti-parallel
Strand 7	A	393	396	anti-parallel
Strand 8	A	325	328	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	216	219	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	52	first strand
Strand 2	D	113	122	anti-parallel
Strand 3	D	128	139	anti-parallel
Strand 4	D	84	91	parallel
Strand 5	D	74	81	anti-parallel
Strand 6	D	58	69	anti-parallel
Strand 7	D	113	122	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	246	254	parallel
Strand 3	D	266	275	anti-parallel
Strand 4	D	477	483	anti-parallel
Strand 5	D	426	433	anti-parallel
Strand 6	D	419	423	anti-parallel
Strand 7	D	393	396	anti-parallel
Strand 8	D	325	328	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	224	228	anti-parallel
Strand 3	D	216	219	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	305	first strand
Strand 2	D	316	319	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	113	122	anti-parallel
Strand 3	B	128	139	anti-parallel
Strand 4	B	84	90	parallel
Strand 5	B	75	81	anti-parallel
Strand 6	B	58	69	anti-parallel
Strand 7	B	113	122	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	246	254	parallel
Strand 3	B	266	275	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	426	434	anti-parallel
Strand 6	B	419	423	anti-parallel
Strand 7	B	393	396	anti-parallel
Strand 8	B	325	328	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	216	219	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	305	first strand
Strand 2	B	316	319	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	113	122	anti-parallel
Strand 3	C	128	139	anti-parallel
Strand 4	C	84	91	parallel
Strand 5	C	74	81	anti-parallel
Strand 6	C	58	70	anti-parallel
Strand 7	C	113	122	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	246	254	parallel
Strand 3	C	266	275	anti-parallel
Strand 4	C	477	483	anti-parallel
Strand 5	C	426	433	anti-parallel
Strand 6	C	419	423	anti-parallel
Strand 7	C	393	396	anti-parallel
Strand 8	C	325	328	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	224	228	anti-parallel
Strand 3	C	216	219	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	305	first strand
Strand 2	C	316	319	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HGQ