Analysis of interatomic Contacts of Structural Units in PDB entry:
5HGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HGR entry

There are 2 chains in PDB entry 5HGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3LEU 317
B
 ILE 3LEU 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5HGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
19 30Right-handed alpha
Helix 3
AA3
A
32 48Right-handed alpha
Helix 4
AA4
A
57 73Right-handed alpha
Helix 5
AA5
A
75 89Right-handed alpha
Helix 6
AA6
A
92 100Right-handed alpha
Helix 7
AA7
A
102 119Right-handed alpha
Helix 8
AA8
A
132 145Right-handed alpha
Helix 9
AA9
A
146 161Right-handed alpha
Helix 10
AB1
A
164 169Right-handed 310
Helix 11
AB2
A
183 187Right-handed 310
Helix 12
AB3
A
197 209Right-handed alpha
Helix 13
AB4
A
211 216Right-handed alpha
Helix 14
AB5
A
235 247Right-handed alpha
Helix 15
AB6
A
263 265Right-handed 310
Helix 16
AB7
A
280 284Right-handed 310
Helix 17
AB8
A
310 316Right-handed 310
Helix 18
AB9
B
4 9Right-handed alpha
Helix 19
AC1
B
19 29Right-handed alpha
Helix 20
AC2
B
32 48Right-handed alpha
Helix 21
AC3
B
57 62Right-handed alpha
Helix 22
AC4
B
64 74Right-handed alpha
Helix 23
AC5
B
75 89Right-handed alpha
Helix 24
AC6
B
92 100Right-handed alpha
Helix 25
AC7
B
102 119Right-handed alpha
Helix 26
AC8
B
132 145Right-handed alpha
Helix 27
AC9
B
147 160Right-handed alpha
Helix 28
AD1
B
183 187Right-handed 310
Helix 29
AD2
B
197 209Right-handed alpha
Helix 30
AD3
B
211 217Right-handed alpha
Helix 31
AD4
B
235 247Right-handed alpha
Helix 32
AD5
B
263 265Right-handed 310
Helix 33
AD6
B
280 284Right-handed 310
Helix 34
AD7
B
310 316Right-handed 310
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There are 2 sheets in PDB entry 5HGR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
219 226anti-parallel
Strand 3
A
300 307parallel
Strand 4
A
286 294anti-parallel
Strand 5
A
267 276anti-parallel
Strand 6
A
251 261anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
219 226anti-parallel
Strand 3
B
300 307parallel
Strand 4
B
286 294anti-parallel
Strand 5
B
267 276anti-parallel
Strand 6
B
251 261anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il