Analysis of interatomic Contacts of Structural Units in PDB entry:
5HH3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HH3 entry

There are 2 chains in PDB entry 5HH3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3TRP 391
C
 GLY -5TRP 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5HH3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
22 32Right-handed alpha
Helix 3
AA3
A
53 63Right-handed alpha
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
84 88Right-handed 310
Helix 6
AA6
A
91 101Right-handed alpha
Helix 7
AA7
A
102 104Right-handed 310
Helix 8
AA8
A
105 131Right-handed alpha
Helix 9
AA9
A
136 140Right-handed alpha
Helix 10
AB1
A
140 154Right-handed alpha
Helix 11
AB2
A
156 158Right-handed 310
Helix 12
AB3
A
159 173Right-handed alpha
Helix 13
AB4
A
175 200Right-handed alpha
Helix 14
AB5
A
204 214Right-handed alpha
Helix 15
AB6
A
215 217Right-handed 310
Helix 16
AB7
A
218 251Right-handed alpha
Helix 17
AB8
A
251 261Right-handed alpha
Helix 18
AB9
A
262 265Right-handed 310
Helix 19
AC1
A
267 277Right-handed alpha
Helix 20
AC2
A
307 313Right-handed alpha
Helix 21
AC3
A
318 322Right-handed 310
Helix 22
AC4
A
344 363Right-handed alpha
Helix 23
AC5
C
-3 0Right-handed 310
Helix 24
AC6
C
1 14Right-handed alpha
Helix 25
AC7
C
22 32Right-handed alpha
Helix 26
AC8
C
53 63Right-handed alpha
Helix 27
AC9
C
68 73Right-handed alpha
Helix 28
AD1
C
74 79Right-handed 310
Helix 29
AD2
C
84 88Right-handed 310
Helix 30
AD3
C
91 101Right-handed alpha
Helix 31
AD4
C
102 104Right-handed 310
Helix 32
AD5
C
105 131Right-handed alpha
Helix 33
AD6
C
136 140Right-handed alpha
Helix 34
AD7
C
140 154Right-handed alpha
Helix 35
AD8
C
156 173Right-handed alpha
Helix 36
AD9
C
175 200Right-handed alpha
Helix 37
AE1
C
204 214Right-handed alpha
Helix 38
AE2
C
218 231Right-handed alpha
Helix 39
AE3
C
231 251Right-handed alpha
Helix 40
AE4
C
251 261Right-handed alpha
Helix 41
AE5
C
262 265Right-handed 310
Helix 42
AE6
C
267 277Right-handed alpha
Helix 43
AE7
C
307 313Right-handed alpha
Helix 44
AE8
C
318 322Right-handed 310
Helix 45
AE9
C
337 341Right-handed 310
Helix 46
AF1
C
344 363Right-handed alpha
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There are 8 sheets in PDB entry 5HH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
20 21anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
303 306parallel
Strand 4
A
285 287anti-parallel
Strand 5
A
66 67anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
388 390anti-parallel
Strand 3
A
367 368anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
296 298anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
20 21anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 39first strand
Strand 2
C
47 51anti-parallel
Strand 3
C
303 306parallel
Strand 4
C
285 287anti-parallel
Strand 5
C
66 67anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
388 390anti-parallel
Strand 3
C
367 368anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 293first strand
Strand 2
C
296 298anti-parallel
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