Analysis of interatomic Contacts of Structural Units in PDB entry:
5HH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HH9 entry

There are 2 chains in PDB entry 5HH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 38ALA 427
B
 ASN 38GLY 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 5HH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 45Right-handed alpha
Helix 2
AA2
A
65 82Right-handed alpha
Helix 3
AA3
A
82 88Right-handed alpha
Helix 4
AA4
A
90 110Right-handed alpha
Helix 5
AA5
A
112 114Right-handed 310
Helix 6
AA6
A
121 133Right-handed alpha
Helix 7
AA7
A
148 163Right-handed alpha
Helix 8
AA8
A
174 178Right-handed 310
Helix 9
AA9
A
179 191Right-handed alpha
Helix 10
AB1
A
212 225Right-handed alpha
Helix 11
AB2
A
240 243Right-handed 310
Helix 12
AB3
A
249 254Right-handed 310
Helix 13
AB4
A
298 303Right-handed alpha
Helix 14
AB5
A
310 315Right-handed alpha
Helix 15
AB6
A
317 328Right-handed alpha
Helix 16
AB7
A
328 349Right-handed alpha
Helix 17
AB8
A
360 364Right-handed 310
Helix 18
AB9
A
376 387Right-handed alpha
Helix 19
AC1
A
411 427Right-handed alpha
Helix 20
AC2
B
39 45Right-handed alpha
Helix 21
AC3
B
65 82Right-handed alpha
Helix 22
AC4
B
82 88Right-handed alpha
Helix 23
AC5
B
90 110Right-handed alpha
Helix 24
AC6
B
112 114Right-handed 310
Helix 25
AC7
B
121 133Right-handed alpha
Helix 26
AC8
B
148 163Right-handed alpha
Helix 27
AC9
B
179 191Right-handed alpha
Helix 28
AD1
B
212 225Right-handed alpha
Helix 29
AD2
B
226 227Right-handed 310
Helix 30
AD3
B
228 232Right-handed 310
Helix 31
AD4
B
240 243Right-handed 310
Helix 32
AD5
B
249 254Right-handed 310
Helix 33
AD6
B
298 303Right-handed alpha
Helix 34
AD7
B
310 315Right-handed alpha
Helix 35
AD8
B
317 328Right-handed alpha
Helix 36
AD9
B
328 348Right-handed alpha
Helix 37
AE1
B
360 364Right-handed 310
Helix 38
AE2
B
376 387Right-handed alpha
Helix 39
AE3
B
411 427Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5HH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
389 390parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
257 261anti-parallel
Strand 4
A
234 238parallel
Strand 5
A
195 201parallel
Strand 6
A
140 144parallel
Strand 7
A
165 169parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
400 404anti-parallel
Strand 4
A
392 395anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
389 390parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
273 277anti-parallel
Strand 3
B
257 261anti-parallel
Strand 4
B
234 238parallel
Strand 5
B
195 201parallel
Strand 6
B
140 144parallel
Strand 7
B
165 169parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 355first strand
Strand 2
B
368 372anti-parallel
Strand 3
B
399 404anti-parallel
Strand 4
B
392 396anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il