Analysis of interatomic Contacts of Structural Units in PDB entry:
5HHC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HHC entry

There are 10 chains in PDB entry 5HHC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6LYS 100
B
 GLU 6LYS 100
C
 GLY 6GLY 7
C
 GLY 16GLY 16
C
 GLY 21GLY 21
C
 GLY 65GLY 66
D
 GLY 6GLY 7
D
 GLY 16GLY 16
D
 GLY 21GLY 21
D
 GLY 65GLY 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5HHC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 18Right-handed alpha
Helix 2
AA2
A
28 32Right-handed alpha
Helix 3
AA3
B
9 18Right-handed alpha
Helix 4
AA4
B
28 32Right-handed alpha
Helix 5
AA5
C
29 43Right-handed alpha
Helix 6
AA6
D
29 45Right-handed alpha
Helix 7
AA7
D
55 57Right-handed 310
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There are 4 sheets in PDB entry 5HHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 27first strand
Strand 2
A
44 51anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
59 77anti-parallel
Strand 3
A
81 99anti-parallel
Strand 4
D
47 54parallel
Strand 5
D
59 64anti-parallel
Strand 6
D
8 15parallel
Strand 7
D
20 27anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 27first strand
Strand 2
B
44 51anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
59 77anti-parallel
Strand 3
B
81 99anti-parallel
Strand 4
C
47 54parallel
Strand 5
C
59 64anti-parallel
Strand 6
C
8 15parallel
Strand 7
C
20 27anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il