Analysis of interatomic Contacts of Structural Units in PDB entry:
5HHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HHJ entry

There are 2 chains in PDB entry 5HHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 12LYS 305
B
 ASP 14GLN 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5HHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 23Right-handed alpha
Helix 2
AA2
A
24 39Right-handed alpha
Helix 3
AA3
A
48 50Right-handed 310
Helix 4
AA4
A
51 69Right-handed alpha
Helix 5
AA5
A
96 116Right-handed alpha
Helix 6
AA6
A
130 144Right-handed alpha
Helix 7
AA7
A
156 161Right-handed alpha
Helix 8
AA8
A
162 172Right-handed alpha
Helix 9
AA9
A
176 190Right-handed alpha
Helix 10
AB1
A
195 200Right-handed 310
Helix 11
AB2
A
210 229Right-handed alpha
Helix 12
AB3
A
246 265Right-handed alpha
Helix 13
AB4
A
278 281Right-handed 310
Helix 14
AB5
B
18 23Right-handed alpha
Helix 15
AB6
B
24 39Right-handed alpha
Helix 16
AB7
B
48 50Right-handed 310
Helix 17
AB8
B
51 69Right-handed alpha
Helix 18
AB9
B
96 116Right-handed alpha
Helix 19
AC1
B
130 144Right-handed alpha
Helix 20
AC2
B
156 161Right-handed alpha
Helix 21
AC3
B
162 172Right-handed alpha
Helix 22
AC4
B
176 190Right-handed alpha
Helix 23
AC5
B
195 200Right-handed 310
Helix 24
AC6
B
210 229Right-handed alpha
Helix 25
AC7
B
246 264Right-handed alpha
Helix 26
AC8
B
278 281Right-handed 310
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There are 6 sheets in PDB entry 5HHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
89 94anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 236first strand
Strand 2
A
239 244anti-parallel
Strand 3
A
148 151anti-parallel
Strand 4
A
275 277anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
287 292anti-parallel
Strand 3
A
297 302anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
89 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 236first strand
Strand 2
B
239 244anti-parallel
Strand 3
B
148 152anti-parallel
Strand 4
B
275 277anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
287 292anti-parallel
Strand 3
B
297 302anti-parallel
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