Analysis of interatomic Contacts of Structural Units in PDB entry:
5HHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HHL entry

There are 5 chains in PDB entry 5HHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 292
B	THR 3	ALA 292
C	THR 3	HIS 291
D	MET 1	ALA 292
E	THR 3	ILE 90

There are103 helices in PDB entry 5HHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	11	Right-handed alpha
Helix 2	AA2	A	12	27	Right-handed alpha
Helix 3	AA3	A	36	38	Right-handed 310
Helix 4	AA4	A	39	57	Right-handed alpha
Helix 5	AA5	A	84	104	Right-handed alpha
Helix 6	AA6	A	118	132	Right-handed alpha
Helix 7	AA7	A	144	149	Right-handed alpha
Helix 8	AA8	A	150	160	Right-handed alpha
Helix 9	AA9	A	164	178	Right-handed alpha
Helix 10	AB1	A	182	188	Right-handed 310
Helix 11	AB2	A	198	217	Right-handed alpha
Helix 12	AB3	A	234	252	Right-handed alpha
Helix 13	AB4	A	266	269	Right-handed 310
Helix 14	AB5	B	6	11	Right-handed alpha
Helix 15	AB6	B	12	27	Right-handed alpha
Helix 16	AB7	B	36	38	Right-handed 310
Helix 17	AB8	B	39	57	Right-handed alpha
Helix 18	AB9	B	84	104	Right-handed alpha
Helix 19	AC1	B	118	132	Right-handed alpha
Helix 20	AC2	B	144	149	Right-handed alpha
Helix 21	AC3	B	150	160	Right-handed alpha
Helix 22	AC4	B	164	178	Right-handed alpha
Helix 23	AC5	B	183	188	Right-handed 310
Helix 24	AC6	B	198	217	Right-handed alpha
Helix 25	AC7	B	234	252	Right-handed alpha
Helix 26	AC8	B	266	269	Right-handed 310
Helix 27	AC9	C	5	11	Right-handed alpha
Helix 28	AD1	C	12	27	Right-handed alpha
Helix 29	AD2	C	36	38	Right-handed 310
Helix 30	AD3	C	39	57	Right-handed alpha
Helix 31	AD4	C	84	104	Right-handed alpha
Helix 32	AD5	C	118	132	Right-handed alpha
Helix 33	AD6	C	144	149	Right-handed alpha
Helix 34	AD7	C	150	160	Right-handed alpha
Helix 35	AD8	C	164	178	Right-handed alpha
Helix 36	AD9	C	182	188	Right-handed 310
Helix 37	AE1	C	198	217	Right-handed alpha
Helix 38	AE2	C	234	252	Right-handed alpha
Helix 39	AE3	D	5	11	Right-handed alpha
Helix 40	AE4	D	12	27	Right-handed alpha
Helix 41	AE5	D	36	38	Right-handed 310
Helix 42	AE6	D	39	57	Right-handed alpha
Helix 43	AE7	D	84	104	Right-handed alpha
Helix 44	AE8	D	118	132	Right-handed alpha
Helix 45	AE9	D	144	149	Right-handed alpha
Helix 46	AF1	D	150	160	Right-handed alpha
Helix 47	AF2	D	164	178	Right-handed alpha
Helix 48	AF3	D	183	188	Right-handed 310
Helix 49	AF4	D	198	217	Right-handed alpha
Helix 50	AF5	D	234	252	Right-handed alpha
Helix 51	AF6	D	266	269	Right-handed 310
Helix 52	AF7	E	5	11	Right-handed alpha
Helix 53	AF8	E	12	27	Right-handed alpha
Helix 54	AF9	E	36	38	Right-handed 310
Helix 55	AG1	E	39	57	Right-handed alpha
Helix 56	AG2	E	84	104	Right-handed alpha
Helix 57	AG3	E	118	132	Right-handed alpha
Helix 58	AG4	E	144	149	Right-handed alpha
Helix 59	AG5	E	150	160	Right-handed alpha
Helix 60	AG6	E	164	177	Right-handed alpha
Helix 61	AG7	E	182	188	Right-handed 310
Helix 62	AG8	E	198	217	Right-handed alpha
Helix 63	AG9	E	234	253	Right-handed alpha
Helix 64	AH1	E	266	269	Right-handed 310
Helix 65	AH2	F	6	11	Right-handed alpha
Helix 66	AH3	F	12	27	Right-handed alpha
Helix 67	AH4	F	36	38	Right-handed 310
Helix 68	AH5	F	39	57	Right-handed alpha
Helix 69	AH6	F	84	104	Right-handed alpha
Helix 70	AH7	F	118	132	Right-handed alpha
Helix 71	AH8	F	144	149	Right-handed alpha
Helix 72	AH9	F	150	162	Right-handed alpha
Helix 73	AI1	F	164	177	Right-handed alpha
Helix 74	AI2	F	182	188	Right-handed 310
Helix 75	AI3	F	198	217	Right-handed alpha
Helix 76	AI4	F	234	252	Right-handed alpha
Helix 77	AI5	F	266	269	Right-handed 310
Helix 78	AI6	G	5	11	Right-handed alpha
Helix 79	AI7	G	12	27	Right-handed alpha
Helix 80	AI8	G	36	38	Right-handed 310
Helix 81	AI9	G	39	57	Right-handed alpha
Helix 82	AJ1	G	84	104	Right-handed alpha
Helix 83	AJ2	G	118	132	Right-handed alpha
Helix 84	AJ3	G	144	149	Right-handed alpha
Helix 85	AJ4	G	150	160	Right-handed alpha
Helix 86	AJ5	G	164	178	Right-handed alpha
Helix 87	AJ6	G	183	188	Right-handed 310
Helix 88	AJ7	G	198	217	Right-handed alpha
Helix 89	AJ8	G	234	254	Right-handed alpha
Helix 90	AJ9	G	266	269	Right-handed 310
Helix 91	AK1	H	6	11	Right-handed alpha
Helix 92	AK2	H	12	27	Right-handed alpha
Helix 93	AK3	H	36	38	Right-handed 310
Helix 94	AK4	H	39	57	Right-handed alpha
Helix 95	AK5	H	84	104	Right-handed alpha
Helix 96	AK6	H	118	132	Right-handed alpha
Helix 97	AK7	H	144	149	Right-handed alpha
Helix 98	AK8	H	150	160	Right-handed alpha
Helix 99	AK9	H	164	177	Right-handed alpha
Helix 100	AL1	H	182	188	Right-handed 310
Helix 101	AL2	H	198	217	Right-handed alpha
Helix 102	AL3	H	234	252	Right-handed alpha
Helix 103	AL4	H	266	269	Right-handed 310

There are 24 sheets in PDB entry 5HHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	77	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	136	139	anti-parallel
Strand 4	A	263	265	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	275	280	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	77	82	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	224	first strand
Strand 2	B	227	232	anti-parallel
Strand 3	B	136	140	anti-parallel
Strand 4	B	263	265	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	275	280	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	77	82	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	224	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	136	139	anti-parallel
Strand 4	C	263	265	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	275	280	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	78	82	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	224	first strand
Strand 2	D	227	232	anti-parallel
Strand 3	D	136	140	anti-parallel
Strand 4	D	263	265	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	272	first strand
Strand 2	D	275	280	anti-parallel
Strand 3	D	285	290	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	71	first strand
Strand 2	E	77	82	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	224	first strand
Strand 2	E	227	232	anti-parallel
Strand 3	E	136	140	anti-parallel
Strand 4	E	263	265	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	272	first strand
Strand 2	E	275	280	anti-parallel
Strand 3	E	285	290	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	70	first strand
Strand 2	F	78	82	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	224	first strand
Strand 2	F	227	232	anti-parallel
Strand 3	F	136	140	anti-parallel
Strand 4	F	263	265	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	272	first strand
Strand 2	F	275	280	anti-parallel
Strand 3	F	285	290	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	77	82	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	224	first strand
Strand 2	G	227	232	anti-parallel
Strand 3	G	136	141	anti-parallel
Strand 4	G	263	265	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	272	first strand
Strand 2	G	275	280	anti-parallel
Strand 3	G	285	290	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	70	first strand
Strand 2	H	78	82	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	220	224	first strand
Strand 2	H	227	232	anti-parallel
Strand 3	H	136	141	anti-parallel
Strand 4	H	263	265	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	271	272	first strand
Strand 2	H	275	280	anti-parallel
Strand 3	H	285	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HHL