Analysis of interatomic Contacts of Structural Units in PDB entry:
5HHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HHW entry

There is 1 chain in PDB entry 5HHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1005LYS 1310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5HHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1019 1021Right-handed 310
Helix 2
AA2
A
1064 1079Right-handed alpha
Helix 3
AA3
A
1110 1118Right-handed alpha
Helix 4
AA4
A
1132 1153Right-handed alpha
Helix 5
AA5
A
1199 1203Right-handed 310
Helix 6
AA6
A
1204 1211Right-handed alpha
Helix 7
AA7
A
1214 1232Right-handed alpha
Helix 8
AA8
A
1241 1251Right-handed alpha
Helix 9
AA9
A
1262 1273Right-handed alpha
Helix 10
AB1
A
1276 1280Right-handed 310
Helix 11
AB2
A
1282 1291Right-handed alpha
Helix 12
AB3
A
1292 1294Right-handed 310
Helix 13
AB4
A
1297 1302Right-handed alpha
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There are 3 sheets in PDB entry 5HHW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1023 1031first strand
Strand 2
A
1036 1046anti-parallel
Strand 3
A
1049 1058anti-parallel
Strand 4
A
1100 1104anti-parallel
Strand 5
A
1089 1093anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1165 1167first strand
Strand 2
A
1173 1175anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1190 1192first strand
Strand 2
A
1196 1198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il