Analysis of interatomic Contacts of Structural Units in PDB entry:
5HHZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HHZ entry

There is 1 chain in PDB entry 5HHZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 40PRO 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5HHZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 54Right-handed alpha
Helix 2
AA2
A
73 87Right-handed alpha
Helix 3
AA3
A
149 159Right-handed alpha
Helix 4
AA4
A
175 181Right-handed alpha
Helix 5
AA5
A
188 193Right-handed alpha
Helix 6
AA6
A
194 197Right-handed 310
Helix 7
AA7
A
219 227Right-handed alpha
Helix 8
AA8
A
259 272Right-handed alpha
Helix 9
AA9
A
292 294Right-handed 310
Helix 10
AB1
A
313 317Right-handed 310
Helix 11
AB2
A
337 348Right-handed alpha
Helix 12
AB3
A
363 368Right-handed alpha
Helix 13
AB4
A
368 380Right-handed alpha
Helix 14
AB5
A
397 400Right-handed 310
Helix 15
AB6
A
401 406Right-handed alpha
Helix 16
AB7
A
430 432Right-handed 310
Helix 17
AB8
A
459 480Right-handed alpha
Helix 18
AB9
A
493 517Right-handed alpha
Helix 19
AC1
A
523 527Right-handed 310
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There are 4 sheets in PDB entry 5HHZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
67 70anti-parallel
Strand 3
A
112 115parallel
Strand 4
A
93 96parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
139 145anti-parallel
Strand 3
A
235 245anti-parallel
Strand 4
A
163 164anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
139 145anti-parallel
Strand 3
A
235 245anti-parallel
Strand 4
A
199 205anti-parallel
Strand 5
A
211 215anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 362first strand
Strand 2
A
249 257anti-parallel
Strand 3
A
320 330anti-parallel
Strand 4
A
283 290anti-parallel
Strand 5
A
422 428anti-parallel
Strand 6
A
445 451anti-parallel
Strand 7
A
390 395anti-parallel
Strand 8
A
485 486anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il