Analysis of interatomic Contacts of Structural Units in PDB entry:
5HIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HIW entry

There is 1 chain in PDB entry 5HIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5HIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
65 69Right-handed 310
Helix 5
AA5
A
71 75Right-handed 310
Helix 6
AA6
A
76 91Right-handed alpha
Helix 7
AA7
A
92 103Right-handed alpha
Helix 8
AA8
A
103 114Right-handed alpha
Helix 9
AA9
A
123 127Right-handed alpha
Helix 10
AB1
A
129 141Right-handed alpha
Helix 11
AB2
A
143 145Right-handed 310
Helix 12
AB3
A
146 163Right-handed alpha
Helix 13
AB4
A
166 192Right-handed alpha
Helix 14
AB5
A
198 210Right-handed alpha
Helix 15
AB6
A
217 230Right-handed alpha
Helix 16
AB7
A
231 246Right-handed alpha
Helix 17
AB8
A
247 257Right-handed alpha
Helix 18
AB9
A
260 272Right-handed alpha
Helix 19
AC1
A
304 309Right-handed 310
Helix 20
AC2
A
333 337Right-handed 310
Helix 21
AC3
A
340 359Right-handed alpha
Helix 22
AC4
A
375 379Right-handed 310
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There are 4 sheets in PDB entry 5HIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
31 34parallel
Strand 3
A
39 42anti-parallel
Strand 4
A
298 302parallel
Strand 5
A
277 282anti-parallel
Strand 6
A
58 59anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
388 390anti-parallel
Strand 3
A
363 364anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
291 293anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
383 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il