Analysis of interatomic Contacts of Structural Units in PDB entry:
5HJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HJ2 entry

There are 6 chains in PDB entry 5HJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 5GLY 201
A
 SER 6GLY 201
B
 SER 6GLY 201
D
 PRO 5GLY 201
E
 SER 6GLY 201
F
 LEU 7GLY 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5HJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
22 36Right-handed alpha
Helix 2
AA2
C
66 77Right-handed alpha
Helix 3
AA3
C
86 98Right-handed alpha
Helix 4
AA4
C
100 104Right-handed 310
Helix 5
AA5
C
123 125Right-handed 310
Helix 6
AA6
C
126 137Right-handed alpha
Helix 7
AA7
C
147 153Right-handed alpha
Helix 8
AA8
C
157 168Right-handed alpha
Helix 9
AA9
C
184 198Right-handed alpha
Helix 10
AB1
A
22 36Right-handed alpha
Helix 11
AB2
A
66 77Right-handed alpha
Helix 12
AB3
A
86 98Right-handed alpha
Helix 13
AB4
A
123 125Right-handed 310
Helix 14
AB5
A
126 137Right-handed alpha
Helix 15
AB6
A
147 153Right-handed alpha
Helix 16
AB7
A
157 168Right-handed alpha
Helix 17
AB8
A
184 198Right-handed alpha
Helix 18
AB9
B
22 36Right-handed alpha
Helix 19
AC1
B
66 77Right-handed alpha
Helix 20
AC2
B
86 98Right-handed alpha
Helix 21
AC3
B
100 104Right-handed 310
Helix 22
AC4
B
123 125Right-handed 310
Helix 23
AC5
B
126 137Right-handed alpha
Helix 24
AC6
B
147 153Right-handed alpha
Helix 25
AC7
B
157 168Right-handed alpha
Helix 26
AC8
B
182 187Right-handed 310
Helix 27
AC9
B
188 198Right-handed alpha
Helix 28
AD1
D
22 36Right-handed alpha
Helix 29
AD2
D
66 77Right-handed alpha
Helix 30
AD3
D
86 98Right-handed alpha
Helix 31
AD4
D
123 125Right-handed 310
Helix 32
AD5
D
126 137Right-handed alpha
Helix 33
AD6
D
147 153Right-handed alpha
Helix 34
AD7
D
157 168Right-handed alpha
Helix 35
AD8
D
182 184Right-handed 310
Helix 36
AD9
D
185 198Right-handed alpha
Helix 37
AE1
E
22 36Right-handed alpha
Helix 38
AE2
E
66 76Right-handed alpha
Helix 39
AE3
E
86 98Right-handed alpha
Helix 40
AE4
E
123 125Right-handed 310
Helix 41
AE5
E
126 137Right-handed alpha
Helix 42
AE6
E
147 153Right-handed alpha
Helix 43
AE7
E
157 168Right-handed alpha
Helix 44
AE8
E
184 197Right-handed alpha
Helix 45
AE9
F
22 36Right-handed alpha
Helix 46
AF1
F
66 75Right-handed alpha
Helix 47
AF2
F
86 98Right-handed alpha
Helix 48
AF3
F
123 125Right-handed 310
Helix 49
AF4
F
126 137Right-handed alpha
Helix 50
AF5
F
147 153Right-handed alpha
Helix 51
AF6
F
157 168Right-handed alpha
Helix 52
AF7
F
181 186Right-handed 310
Helix 53
AF8
F
188 198Right-handed alpha
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There are 6 sheets in PDB entry 5HJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 59first strand
Strand 2
C
44 51anti-parallel
Strand 3
C
8 15parallel
Strand 4
C
110 117parallel
Strand 5
C
139 146parallel
Strand 6
C
176 179parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
44 51anti-parallel
Strand 3
A
8 15parallel
Strand 4
A
110 117parallel
Strand 5
A
139 146parallel
Strand 6
A
176 179parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
44 51anti-parallel
Strand 3
B
8 15parallel
Strand 4
B
110 117parallel
Strand 5
B
140 146parallel
Strand 6
B
176 179parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 59first strand
Strand 2
D
44 51anti-parallel
Strand 3
D
8 15parallel
Strand 4
D
110 117parallel
Strand 5
D
139 146parallel
Strand 6
D
176 179parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 59first strand
Strand 2
E
44 51anti-parallel
Strand 3
E
8 15parallel
Strand 4
E
110 117parallel
Strand 5
E
139 146parallel
Strand 6
E
176 179parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
55 59first strand
Strand 2
F
44 51anti-parallel
Strand 3
F
8 15parallel
Strand 4
F
110 117parallel
Strand 5
F
140 146parallel
Strand 6
F
176 179parallel
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