Analysis of interatomic Contacts of Structural Units in PDB entry:
5HJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HJD entry

There are 24 chains in PDB entry 5HJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 138
C	MET 1	ALA 138
E	MET 1	ALA 138
G	MET 1	ALA 138
K	MET 1	ALA 138
N	ALA 2	ALA 138
Q	MET 1	ALA 138
T	MET 1	ALA 138
L	LYS 14	ARG 17
L	GLN 19	LEU 20
M	LYS 14	ARG 17
M	GLN 19	LEU 20
B	LYS 14	ARG 17
B	GLN 19	LEU 20
D	LYS 14	ARG 17
D	GLN 19	LEU 20
F	ALA 15	ARG 17
F	GLN 19	GLN 19
H	ALA 15	ARG 17
H	GLN 19	GLN 19
I	ALA 15	ARG 17
I	GLN 19	GLN 19
J	ALA 15	ARG 17
J	GLN 19	LEU 20

There are 20 helices in PDB entry 5HJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	46	Right-handed 310
Helix 2	AA2	A	128	138	Right-handed alpha
Helix 3	AA3	C	38	42	Right-handed 310
Helix 4	AA4	C	43	46	Right-handed 310
Helix 5	AA5	C	128	138	Right-handed alpha
Helix 6	AA6	E	43	46	Right-handed 310
Helix 7	AA7	E	128	138	Right-handed alpha
Helix 8	AA8	G	38	42	Right-handed 310
Helix 9	AA9	G	43	46	Right-handed 310
Helix 10	AB1	G	128	137	Right-handed alpha
Helix 11	AB2	K	43	46	Right-handed 310
Helix 12	AB3	K	128	137	Right-handed alpha
Helix 13	AB4	N	38	42	Right-handed 310
Helix 14	AB5	N	43	46	Right-handed 310
Helix 15	AB6	N	128	138	Right-handed alpha
Helix 16	AB7	Q	43	46	Right-handed 310
Helix 17	AB8	Q	128	138	Right-handed alpha
Helix 18	AB9	T	38	42	Right-handed 310
Helix 19	AC1	T	43	46	Right-handed 310
Helix 20	AC2	T	128	137	Right-handed alpha

There are 22 sheets in PDB entry 5HJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	77	first strand
Strand 2	A	30	37	anti-parallel
Strand 3	A	3	19	anti-parallel
Strand 4	C	5	19	anti-parallel
Strand 5	C	30	37	anti-parallel
Strand 6	C	71	77	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	125	first strand
Strand 2	A	3	19	anti-parallel
Strand 3	C	5	19	anti-parallel
Strand 4	C	114	125	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	48	54	anti-parallel
Strand 3	A	81	89	anti-parallel
Strand 4	A	97	104	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	48	54	anti-parallel
Strand 3	C	81	89	anti-parallel
Strand 4	C	97	104	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	125	first strand
Strand 2	G	3	19	anti-parallel
Strand 3	G	30	37	anti-parallel
Strand 4	G	71	74	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	77	first strand
Strand 2	E	30	37	anti-parallel
Strand 3	E	6	19	anti-parallel
Strand 4	G	3	19	anti-parallel
Strand 5	G	30	37	anti-parallel
Strand 6	G	71	74	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	125	first strand
Strand 2	G	3	19	anti-parallel
Strand 3	E	3	4	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	125	first strand
Strand 2	E	6	19	anti-parallel
Strand 3	E	30	37	anti-parallel
Strand 4	E	71	77	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	66	first strand
Strand 2	E	48	54	anti-parallel
Strand 3	E	81	89	anti-parallel
Strand 4	E	97	104	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	66	first strand
Strand 2	G	48	54	anti-parallel
Strand 3	G	81	89	anti-parallel
Strand 4	G	97	104	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	125	first strand
Strand 2	N	3	19	anti-parallel
Strand 3	N	30	37	anti-parallel
Strand 4	N	71	74	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	71	77	first strand
Strand 2	K	30	37	anti-parallel
Strand 3	K	6	19	anti-parallel
Strand 4	N	3	19	anti-parallel
Strand 5	N	30	37	anti-parallel
Strand 6	N	71	74	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	125	first strand
Strand 2	N	3	19	anti-parallel
Strand 3	K	3	4	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	114	125	first strand
Strand 2	K	6	19	anti-parallel
Strand 3	K	30	37	anti-parallel
Strand 4	K	71	77	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	63	66	first strand
Strand 2	K	48	54	anti-parallel
Strand 3	K	81	89	anti-parallel
Strand 4	K	97	104	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	66	first strand
Strand 2	N	48	54	anti-parallel
Strand 3	N	81	89	anti-parallel
Strand 4	N	97	104	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	4	first strand
Strand 2	T	6	19	anti-parallel
Strand 3	T	30	37	anti-parallel
Strand 4	T	71	77	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	4	first strand
Strand 2	T	6	19	anti-parallel
Strand 3	T	114	125	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	71	77	first strand
Strand 2	Q	30	37	anti-parallel
Strand 3	Q	6	19	anti-parallel
Strand 4	Q	114	125	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	71	77	first strand
Strand 2	Q	30	37	anti-parallel
Strand 3	Q	6	19	anti-parallel
Strand 4	T	3	4	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	63	66	first strand
Strand 2	Q	48	54	anti-parallel
Strand 3	Q	81	89	anti-parallel
Strand 4	Q	97	104	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	63	66	first strand
Strand 2	T	48	54	anti-parallel
Strand 3	T	81	89	anti-parallel
Strand 4	T	97	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HJD