Analysis of interatomic Contacts of Structural Units in PDB entry:
5HJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HJP entry

There are 4 chains in PDB entry 5HJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 299GLN 548
B
 GLY 217ASP 477
C
 MET 299GLN 548
D
 GLN 219ASP 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5HJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
300 310Right-handed alpha
Helix 2
AA2
A
337 357Right-handed alpha
Helix 3
AA3
A
364 388Right-handed alpha
Helix 4
AA4
A
389 391Right-handed 310
Helix 5
AA5
A
405 411Right-handed alpha
Helix 6
AA6
A
413 424Right-handed alpha
Helix 7
AA7
A
424 431Right-handed alpha
Helix 8
AA8
A
434 447Right-handed alpha
Helix 9
AA9
A
456 479Right-handed alpha
Helix 10
AB1
A
484 491Right-handed alpha
Helix 11
AB2
A
491 514Right-handed alpha
Helix 12
AB3
A
519 527Right-handed alpha
Helix 13
AB4
A
542 547Right-handed alpha
Helix 14
AB5
B
221 245Right-handed alpha
Helix 15
AB6
B
246 249Right-handed 310
Helix 16
AB7
B
261 289Right-handed alpha
Helix 17
AB8
B
291 295Right-handed 310
Helix 18
AB9
B
296 318Right-handed alpha
Helix 19
AC1
B
336 343Right-handed alpha
Helix 20
AC2
B
346 364Right-handed alpha
Helix 21
AC3
B
366 379Right-handed alpha
Helix 22
AC4
B
388 411Right-handed alpha
Helix 23
AC5
B
416 445Right-handed alpha
Helix 24
AC6
B
450 458Right-handed alpha
Helix 25
AC7
B
462 466Right-handed 310
Helix 26
AC8
B
469 477Right-handed alpha
Helix 27
AC9
C
300 311Right-handed alpha
Helix 28
AD1
C
336 357Right-handed alpha
Helix 29
AD2
C
364 388Right-handed alpha
Helix 30
AD3
C
405 411Right-handed alpha
Helix 31
AD4
C
413 424Right-handed alpha
Helix 32
AD5
C
424 431Right-handed alpha
Helix 33
AD6
C
434 447Right-handed alpha
Helix 34
AD7
C
456 479Right-handed alpha
Helix 35
AD8
C
484 491Right-handed alpha
Helix 36
AD9
C
492 514Right-handed alpha
Helix 37
AE1
C
519 528Right-handed alpha
Helix 38
AE2
C
542 548Right-handed alpha
Helix 39
AE3
D
221 244Right-handed alpha
Helix 40
AE4
D
263 288Right-handed alpha
Helix 41
AE5
D
291 295Right-handed 310
Helix 42
AE6
D
296 318Right-handed alpha
Helix 43
AE7
D
336 343Right-handed alpha
Helix 44
AE8
D
346 364Right-handed alpha
Helix 45
AE9
D
366 379Right-handed alpha
Helix 46
AF1
D
388 411Right-handed alpha
Helix 47
AF2
D
416 445Right-handed alpha
Helix 48
AF3
D
450 458Right-handed alpha
Helix 49
AF4
D
462 466Right-handed 310
Helix 50
AF5
D
469 476Right-handed alpha
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There are 4 sheets in PDB entry 5HJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
402 404anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 321first strand
Strand 2
B
326 329anti-parallel
Strand 3
B
333 335anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
394 396first strand
Strand 2
C
402 404anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
320 321first strand
Strand 2
D
326 329anti-parallel
Strand 3
D
333 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il