Analysis of interatomic Contacts of Structural Units in PDB entry:
5HKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HKD entry

There are 4 chains in PDB entry 5HKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 150ARG 284
B
 ILE 150ASP 279
C
 ILE 150GLY 286
D
 ILE 150GLY 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5HKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 172Right-handed alpha
Helix 2
AA2
A
176 181Right-handed alpha
Helix 3
AA3
A
182 196Right-handed alpha
Helix 4
AA4
A
203 209Right-handed alpha
Helix 5
AA5
A
213 235Right-handed alpha
Helix 6
AA6
A
237 242Right-handed alpha
Helix 7
AA7
A
263 280Right-handed alpha
Helix 8
AA8
B
153 172Right-handed alpha
Helix 9
AA9
B
176 181Right-handed alpha
Helix 10
AB1
B
182 196Right-handed alpha
Helix 11
AB2
B
203 209Right-handed alpha
Helix 12
AB3
B
213 235Right-handed alpha
Helix 13
AB4
B
237 242Right-handed alpha
Helix 14
AB5
B
258 276Right-handed alpha
Helix 15
AB6
C
153 172Right-handed alpha
Helix 16
AB7
C
176 181Right-handed alpha
Helix 17
AB8
C
182 196Right-handed alpha
Helix 18
AB9
C
203 209Right-handed alpha
Helix 19
AC1
C
213 235Right-handed alpha
Helix 20
AC2
C
237 242Right-handed alpha
Helix 21
AC3
C
258 277Right-handed alpha
Helix 22
AC4
D
153 172Right-handed alpha
Helix 23
AC5
D
176 181Right-handed alpha
Helix 24
AC6
D
182 196Right-handed alpha
Helix 25
AC7
D
203 209Right-handed alpha
Helix 26
AC8
D
213 235Right-handed alpha
Helix 27
AC9
D
237 242Right-handed alpha
Helix 28
AD1
D
263 277Right-handed alpha
Helix 29
AD2
D
278 282Right-handed 310
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There are no sheets in PDB entry 5HKD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il