Analysis of interatomic Contacts of Structural Units in PDB entry:
5HKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HKE entry

There are 2 chains in PDB entry 5HKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LEU 323
B
 THR 3LEU 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5HKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 100Right-handed 310
Helix 2
AA2
A
101 110Right-handed alpha
Helix 3
AA3
A
112 121Right-handed alpha
Helix 4
AA4
A
174 182Right-handed alpha
Helix 5
AA5
A
183 186Right-handed 310
Helix 6
AA6
A
209 213Right-handed 310
Helix 7
AA7
A
220 235Right-handed alpha
Helix 8
AA8
A
240 254Right-handed alpha
Helix 9
AA9
B
98 100Right-handed 310
Helix 10
AB1
B
101 108Right-handed alpha
Helix 11
AB2
B
112 121Right-handed alpha
Helix 12
AB3
B
174 182Right-handed alpha
Helix 13
AB4
B
183 186Right-handed 310
Helix 14
AB5
B
209 213Right-handed 310
Helix 15
AB6
B
220 235Right-handed alpha
Helix 16
AB7
B
240 254Right-handed alpha
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There are 6 sheets in PDB entry 5HKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
12 20anti-parallel
Strand 4
A
271 279anti-parallel
Strand 5
A
284 289anti-parallel
Strand 6
A
292 299anti-parallel
Strand 7
B
321 322parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
149 155anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
74 79anti-parallel
Strand 5
A
61 69anti-parallel
Strand 6
A
51 58anti-parallel
Strand 7
A
27 31anti-parallel
Strand 8
A
310 313anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
123 125parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
B
292 299parallel
Strand 3
B
284 289anti-parallel
Strand 4
B
271 279anti-parallel
Strand 5
B
12 20anti-parallel
Strand 6
B
3 8anti-parallel
Strand 7
B
168 169anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 163first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
139 144anti-parallel
Strand 4
B
74 79anti-parallel
Strand 5
B
61 69anti-parallel
Strand 6
B
51 58anti-parallel
Strand 7
B
27 31anti-parallel
Strand 8
B
310 313anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
123 125parallel
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