Analysis of interatomic Contacts of Structural Units in PDB entry:
5HKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HKX entry

There is 1 chain in PDB entry 5HKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 48ILE 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5HKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 71Right-handed alpha
Helix 2
AA2
A
72 76Right-handed 310
Helix 3
AA3
A
83 102Right-handed alpha
Helix 4
AA4
A
105 112Right-handed alpha
Helix 5
AA5
A
112 137Right-handed alpha
Helix 6
AA6
A
138 142Right-handed 310
Helix 7
AA7
A
145 169Right-handed alpha
Helix 8
AA8
A
170 173Right-handed 310
Helix 9
AA9
A
175 179Right-handed 310
Helix 10
AB1
A
183 195Right-handed alpha
Helix 11
AB2
A
202 211Right-handed alpha
Helix 12
AB3
A
217 229Right-handed alpha
Helix 13
AB4
A
238 248Right-handed alpha
Helix 14
AB5
A
250 252Right-handed 310
Helix 15
AB6
A
253 263Right-handed alpha
Helix 16
AB7
A
273 283Right-handed alpha
Helix 17
AB8
A
323 334Right-handed alpha
Helix 18
AB9
A
349 353Right-handed 310
Helix 19
AC1
A
364 379Right-handed alpha
Helix 20
AC2
A
401 411Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5HKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
235 237anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
290 295parallel
Strand 3
A
303 308anti-parallel
Strand 4
A
314 317anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
290 295parallel
Strand 3
A
339 340parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
391 394anti-parallel
Strand 3
A
425 428anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il