Analysis of interatomic Contacts of Structural Units in PDB entry:
5HKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HKZ entry

There are 3 chains in PDB entry 5HKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 48THR 350
B
 GLN 36GLU 54
B
 THR 56PRO 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5HKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 70Right-handed alpha
Helix 2
AA2
A
83 102Right-handed alpha
Helix 3
AA3
A
105 112Right-handed alpha
Helix 4
AA4
A
112 137Right-handed alpha
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
145 169Right-handed alpha
Helix 7
AA7
A
175 179Right-handed 310
Helix 8
AA8
A
183 195Right-handed alpha
Helix 9
AA9
A
202 211Right-handed alpha
Helix 10
AB1
A
218 229Right-handed alpha
Helix 11
AB2
A
238 248Right-handed alpha
Helix 12
AB3
A
250 252Right-handed 310
Helix 13
AB4
A
253 263Right-handed alpha
Helix 14
AB5
A
273 283Right-handed alpha
Helix 15
AB6
A
323 334Right-handed alpha
Helix 16
AB7
B
42 46Right-handed 310
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There are 2 sheets in PDB entry 5HKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
235 237anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
303 308anti-parallel
Strand 3
A
290 295anti-parallel
Strand 4
A
339 340parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il