Analysis of interatomic Contacts of Structural Units in PDB entry:
5HL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HL3 entry

There is 1 chain in PDB entry 5HL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33ASN 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5HL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 45Right-handed alpha
Helix 2
AA2
A
47 58Right-handed alpha
Helix 3
AA3
A
68 74Right-handed alpha
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
92 96Right-handed 310
Helix 6
AA6
A
186 190Right-handed 310
Helix 7
AA7
A
280 285Right-handed 310
Helix 8
AA8
A
311 320Right-handed alpha
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There are 7 sheets in PDB entry 5HL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
66 67anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
103 106parallel
Strand 3
A
127 130parallel
Strand 4
A
154 156parallel
Strand 5
A
177 179parallel
Strand 6
A
201 203parallel
Strand 7
A
223 225parallel
Strand 8
A
245 247parallel
Strand 9
A
268 270parallel
Strand 10
A
287 288parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
161 162parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
275 276parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
377 388parallel
Strand 3
A
299 302parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
377 388parallel
Strand 3
A
361 372anti-parallel
Strand 4
A
328 333anti-parallel
Strand 5
A
337 340anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
342 345anti-parallel
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