Analysis of interatomic Contacts of Structural Units in PDB entry:
5HLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HLD entry

There is 1 chain in PDB entry 5HLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 73GLU 798
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5HLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 89Right-handed alpha
Helix 2
AA2
A
89 96Right-handed alpha
Helix 3
AA3
A
120 131Right-handed alpha
Helix 4
AA4
A
217 221Right-handed 310
Helix 5
AA5
A
222 230Right-handed alpha
Helix 6
AA6
A
270 278Right-handed alpha
Helix 7
AA7
A
288 301Right-handed alpha
Helix 8
AA8
A
302 311Right-handed alpha
Helix 9
AA9
A
326 335Right-handed alpha
Helix 10
AB1
A
338 342Right-handed 310
Helix 11
AB2
A
343 353Right-handed alpha
Helix 12
AB3
A
369 380Right-handed alpha
Helix 13
AB4
A
411 426Right-handed alpha
Helix 14
AB5
A
443 465Right-handed alpha
Helix 15
AB6
A
499 504Right-handed alpha
Helix 16
AB7
A
509 511Right-handed 310
Helix 17
AB8
A
512 522Right-handed alpha
Helix 18
AB9
A
565 572Right-handed alpha
Helix 19
AC1
A
573 585Right-handed alpha
Helix 20
AC2
A
585 597Right-handed alpha
Helix 21
AC3
A
599 603Right-handed 310
Helix 22
AC4
A
606 610Right-handed 310
Helix 23
AC5
A
617 630Right-handed alpha
Helix 24
AC6
A
663 680Right-handed alpha
Helix 25
AC7
A
683 690Right-handed alpha
Helix 26
AC8
A
691 694Right-handed 310
Helix 27
AC9
A
703 705Right-handed 310
Helix 28
AD1
A
738 749Right-handed alpha
Helix 29
AD2
A
791 798Right-handed alpha
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There are 10 sheets in PDB entry 5HLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
105 107anti-parallel
Strand 3
A
437 440parallel
Strand 4
A
640 644anti-parallel
Strand 5
A
650 653anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
195 196anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
144 147parallel
Strand 3
A
151 156anti-parallel
Strand 4
A
169 176anti-parallel
Strand 5
A
179 185anti-parallel
Strand 6
A
190 191anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
322 325parallel
Strand 3
A
315 319anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 488first strand
Strand 2
A
471 478anti-parallel
Strand 3
A
717 724anti-parallel
Strand 4
A
707 713anti-parallel
Strand 5
A
699 701anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 507first strand
Strand 2
A
615 616anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 534first strand
Strand 2
A
562 564anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 541first strand
Strand 2
A
547 548anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 634first strand
Strand 2
A
659 660anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
774 775first strand
Strand 2
A
763 768anti-parallel
Strand 3
A
781 786anti-parallel
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