Analysis of interatomic Contacts of Structural Units in PDB entry:
5HLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HLE entry

There is 1 chain in PDB entry 5HLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 16ALA 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5HLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 41Right-handed alpha
Helix 2
AA2
A
73 82Right-handed alpha
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
106 112Right-handed alpha
Helix 5
AA5
A
122 135Right-handed alpha
Helix 6
AA6
A
136 138Right-handed 310
Helix 7
AA7
A
191 206Right-handed alpha
Helix 8
AA8
A
216 220Right-handed 310
Helix 9
AA9
A
272 285Right-handed alpha
Helix 10
AB1
A
292 295Right-handed 310
Helix 11
AB2
A
296 302Right-handed alpha
Helix 12
AB3
A
303 306Right-handed 310
Helix 13
AB4
A
324 334Right-handed alpha
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There are 4 sheets in PDB entry 5HLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
26 31parallel
Strand 3
A
311 318parallel
Strand 4
A
95 100parallel
Strand 5
A
238 247parallel
Strand 6
A
221 232anti-parallel
Strand 7
A
142 154anti-parallel
Strand 8
A
157 160anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
26 31parallel
Strand 3
A
311 318parallel
Strand 4
A
95 100parallel
Strand 5
A
238 247parallel
Strand 6
A
221 232anti-parallel
Strand 7
A
142 154anti-parallel
Strand 8
A
187 189anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
62 63anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
179 181anti-parallel
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