Analysis of interatomic Contacts of Structural Units in PDB entry:
5HLT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HLT entry

There are 10 chains in PDB entry 5HLT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ASN 279
B
 ASN 2ASN 279
L
 G 101 G 101
L
 T 103 A 112
M
 T 201 A 210
M
 C 212 C 212
C
 G 101 G 101
C
 T 103 A 112
D
 T 201 A 210
D
 C 212 C 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5HLT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 37Right-handed alpha
Helix 2
AA2
A
40 57Right-handed alpha
Helix 3
AA3
A
61 72Right-handed alpha
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
101 113Right-handed alpha
Helix 6
AA6
A
121 131Right-handed alpha
Helix 7
AA7
A
136 151Right-handed alpha
Helix 8
AA8
A
157 164Right-handed alpha
Helix 9
AA9
A
167 172Right-handed alpha
Helix 10
AB1
A
176 190Right-handed alpha
Helix 11
AB2
A
202 220Right-handed alpha
Helix 12
AB3
A
236 245Right-handed alpha
Helix 13
AB4
A
246 249Right-handed 310
Helix 14
AB5
A
263 279Right-handed alpha
Helix 15
AB6
B
21 37Right-handed alpha
Helix 16
AB7
B
41 57Right-handed alpha
Helix 17
AB8
B
61 71Right-handed alpha
Helix 18
AB9
B
90 100Right-handed alpha
Helix 19
AC1
B
101 113Right-handed alpha
Helix 20
AC2
B
121 130Right-handed alpha
Helix 21
AC3
B
136 151Right-handed alpha
Helix 22
AC4
B
156 164Right-handed alpha
Helix 23
AC5
B
167 172Right-handed alpha
Helix 24
AC6
B
176 190Right-handed alpha
Helix 25
AC7
B
202 220Right-handed alpha
Helix 26
AC8
B
236 245Right-handed alpha
Helix 27
AC9
B
254 258Right-handed 310
Helix 28
AD1
B
262 278Right-handed alpha
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There are 4 sheets in PDB entry 5HLT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
87 89anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
223 226anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
86 89anti-parallel
Strand 3
B
80 82anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
229 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il