Analysis of interatomic Contacts of Structural Units in PDB entry:
5HLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HLY entry

There is 1 chain in PDB entry 5HLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 51SER 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5HLY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
51 66Right-handed alpha
Helix 2
AA2
A
79 90Right-handed alpha
Helix 3
AA3
A
97 99Right-handed 310
Helix 4
AA4
A
106 119Right-handed alpha
Helix 5
AA5
A
142 147Right-handed alpha
Helix 6
AA6
A
223 233Right-handed alpha
Helix 7
AA7
A
283 290Right-handed 310
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There are 7 sheets in PDB entry 5HLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 95first strand
Strand 2
A
101 103anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 126first strand
Strand 2
A
292 298anti-parallel
Strand 3
A
149 160anti-parallel
Strand 4
A
217 222anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 126first strand
Strand 2
A
292 298anti-parallel
Strand 3
A
149 160anti-parallel
Strand 4
A
253 255anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
128 129first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
237 243anti-parallel
Strand 4
A
170 179anti-parallel
Strand 5
A
202 212anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
322 324first strand
Strand 2
A
349 351anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
327 329first strand
Strand 2
A
344 346anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
339 341first strand
Strand 2
A
391 404anti-parallel
Strand 3
A
410 425anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il