Analysis of interatomic Contacts of Structural Units in PDB entry:
5HLZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HLZ entry

There are 8 chains in PDB entry 5HLZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 51	GLN 299
B	GLY 311	SER 426
D	GLY 311	SER 426
F	GLY 311	SER 426
H	GLY 311	SER 426
C	GLN 51	GLN 299
E	GLN 51	GLN 299
G	GLN 51	GLN 299

There are 28 helices in PDB entry 5HLZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	66	Right-handed alpha
Helix 2	AA2	A	79	90	Right-handed alpha
Helix 3	AA3	A	106	119	Right-handed alpha
Helix 4	AA4	A	141	146	Right-handed 310
Helix 5	AA5	A	223	233	Right-handed alpha
Helix 6	AA6	A	247	251	Right-handed 310
Helix 7	AA7	A	286	290	Right-handed 310
Helix 8	AA8	B	330	334	Right-handed alpha
Helix 9	AA9	C	52	66	Right-handed alpha
Helix 10	AB1	C	79	90	Right-handed alpha
Helix 11	AB2	C	97	99	Right-handed 310
Helix 12	AB3	C	106	119	Right-handed alpha
Helix 13	AB4	C	142	147	Right-handed alpha
Helix 14	AB5	C	223	233	Right-handed alpha
Helix 15	AB6	C	286	290	Right-handed 310
Helix 16	AB7	E	52	66	Right-handed alpha
Helix 17	AB8	E	79	90	Right-handed alpha
Helix 18	AB9	E	106	115	Right-handed alpha
Helix 19	AC1	E	115	119	Right-handed alpha
Helix 20	AC2	E	141	146	Right-handed 310
Helix 21	AC3	E	223	233	Right-handed alpha
Helix 22	AC4	E	286	290	Right-handed 310
Helix 23	AC5	G	52	66	Right-handed alpha
Helix 24	AC6	G	79	90	Right-handed alpha
Helix 25	AC7	G	106	119	Right-handed alpha
Helix 26	AC8	G	141	146	Right-handed 310
Helix 27	AC9	G	223	233	Right-handed alpha
Helix 28	AD1	G	286	290	Right-handed 310

There are 20 sheets in PDB entry 5HLZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	101	103	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	222	first strand
Strand 2	A	149	160	anti-parallel
Strand 3	A	253	254	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	222	first strand
Strand 2	A	149	160	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	120	126	anti-parallel
Strand 5	D	409	423	anti-parallel
Strand 6	D	393	404	anti-parallel
Strand 7	D	339	341	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	237	243	anti-parallel
Strand 4	A	170	178	anti-parallel
Strand 5	A	203	212	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	329	first strand
Strand 2	B	344	351	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	393	404	anti-parallel
Strand 3	B	409	423	anti-parallel
Strand 4	C	120	126	anti-parallel
Strand 5	C	292	298	anti-parallel
Strand 6	C	149	160	anti-parallel
Strand 7	C	217	222	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	393	404	anti-parallel
Strand 3	B	409	423	anti-parallel
Strand 4	C	120	126	anti-parallel
Strand 5	C	292	298	anti-parallel
Strand 6	C	149	160	anti-parallel
Strand 7	C	253	254	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	329	first strand
Strand 2	D	344	351	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	323	329	first strand
Strand 2	F	344	350	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	393	404	anti-parallel
Strand 3	F	409	423	anti-parallel
Strand 4	G	120	126	anti-parallel
Strand 5	G	292	298	anti-parallel
Strand 6	G	149	160	anti-parallel
Strand 7	G	217	222	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	393	404	anti-parallel
Strand 3	F	409	423	anti-parallel
Strand 4	G	120	126	anti-parallel
Strand 5	G	292	298	anti-parallel
Strand 6	G	149	160	anti-parallel
Strand 7	G	253	255	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	326	329	first strand
Strand 2	H	344	347	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	339	341	first strand
Strand 2	H	392	404	anti-parallel
Strand 3	H	409	424	anti-parallel
Strand 4	E	120	126	anti-parallel
Strand 5	E	292	298	anti-parallel
Strand 6	E	149	160	anti-parallel
Strand 7	E	217	222	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	339	341	first strand
Strand 2	H	392	404	anti-parallel
Strand 3	H	409	424	anti-parallel
Strand 4	E	120	126	anti-parallel
Strand 5	E	292	298	anti-parallel
Strand 6	E	149	160	anti-parallel
Strand 7	E	253	254	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	101	103	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	135	139	anti-parallel
Strand 3	C	237	243	anti-parallel
Strand 4	C	170	178	anti-parallel
Strand 5	C	203	212	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	101	103	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	135	139	anti-parallel
Strand 3	E	237	243	anti-parallel
Strand 4	E	170	178	anti-parallel
Strand 5	E	203	212	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	95	first strand
Strand 2	G	101	103	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	129	first strand
Strand 2	G	135	139	anti-parallel
Strand 3	G	237	243	anti-parallel
Strand 4	G	170	178	anti-parallel
Strand 5	G	203	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HLZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HLZ