Analysis of interatomic Contacts of Structural Units in PDB entry:
5HM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HM2 entry

There are 5 chains in PDB entry 5HM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7ASP 207
B
 ASP 7ASP 207
C
 ASP 7ASP 207
D
 ASP 7ASP 207
E
 ASP 7ASP 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5HM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 14Right-handed alpha
Helix 2
AA2
A
45 49Right-handed alpha
Helix 3
AA3
A
99 103Right-handed 310
Helix 4
AA4
A
195 204Right-handed alpha
Helix 5
AA5
B
8 15Right-handed alpha
Helix 6
AA6
B
45 49Right-handed alpha
Helix 7
AA7
B
99 103Right-handed 310
Helix 8
AA8
B
195 204Right-handed alpha
Helix 9
AA9
C
8 15Right-handed alpha
Helix 10
AB1
C
45 49Right-handed alpha
Helix 11
AB2
C
195 204Right-handed alpha
Helix 12
AB3
D
8 14Right-handed alpha
Helix 13
AB4
D
45 49Right-handed alpha
Helix 14
AB5
D
99 103Right-handed 310
Helix 15
AB6
D
195 204Right-handed alpha
Helix 16
AB7
E
8 14Right-handed alpha
Helix 17
AB8
E
45 49Right-handed alpha
Helix 18
AB9
E
99 103Right-handed 310
Helix 19
AC1
E
195 204Right-handed alpha
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There are 17 sheets in PDB entry 5HM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
16 23anti-parallel
Strand 4
A
26 37anti-parallel
Strand 5
A
40 44anti-parallel
Strand 6
A
85 90anti-parallel
Strand 7
A
67 70anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
80 82anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
188 193anti-parallel
Strand 5
A
174 185anti-parallel
Strand 6
A
166 171anti-parallel
Strand 7
A
114 118anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
139 141anti-parallel
Strand 3
B
67 75parallel
Strand 4
B
85 90anti-parallel
Strand 5
B
40 44anti-parallel
Strand 6
B
26 37anti-parallel
Strand 7
B
16 23anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
139 141anti-parallel
Strand 3
B
67 75parallel
Strand 4
B
80 82anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
60 63anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
114 120anti-parallel
Strand 3
B
166 171anti-parallel
Strand 4
B
174 185anti-parallel
Strand 5
B
188 193anti-parallel
Strand 6
B
151 155anti-parallel
Strand 7
B
130 136anti-parallel
Strand 8
B
114 120anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 149first strand
Strand 2
B
139 141anti-parallel
Strand 3
C
67 72parallel
Strand 4
C
85 90anti-parallel
Strand 5
C
40 44anti-parallel
Strand 6
C
26 37anti-parallel
Strand 7
C
16 23anti-parallel
Strand 8
C
54 57anti-parallel
Strand 9
C
60 63anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 75first strand
Strand 2
C
80 81anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
114 120anti-parallel
Strand 3
C
166 171anti-parallel
Strand 4
C
174 185anti-parallel
Strand 5
C
188 193anti-parallel
Strand 6
C
151 155anti-parallel
Strand 7
C
130 136anti-parallel
Strand 8
C
114 120anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 149first strand
Strand 2
C
139 141anti-parallel
Strand 3
D
67 75parallel
Strand 4
D
85 90anti-parallel
Strand 5
D
40 44anti-parallel
Strand 6
D
26 37anti-parallel
Strand 7
D
16 23anti-parallel
Strand 8
D
54 57anti-parallel
Strand 9
D
60 63anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 149first strand
Strand 2
C
139 141anti-parallel
Strand 3
D
67 75parallel
Strand 4
D
80 82anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 118first strand
Strand 2
D
130 136anti-parallel
Strand 3
D
151 155anti-parallel
Strand 4
D
188 193anti-parallel
Strand 5
D
177 185anti-parallel
Strand 6
D
166 168anti-parallel
Strand 7
D
114 118anti-parallel
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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 149first strand
Strand 2
D
139 141anti-parallel
Strand 3
E
67 75parallel
Strand 4
E
85 90anti-parallel
Strand 5
E
40 44anti-parallel
Strand 6
E
26 37anti-parallel
Strand 7
E
16 23anti-parallel
Strand 8
E
54 57anti-parallel
Strand 9
E
60 63anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 149first strand
Strand 2
D
139 141anti-parallel
Strand 3
E
67 75parallel
Strand 4
E
80 82anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 118first strand
Strand 2
E
130 136anti-parallel
Strand 3
E
151 155anti-parallel
Strand 4
E
188 193anti-parallel
Strand 5
E
177 185anti-parallel
Strand 6
E
166 168anti-parallel
Strand 7
E
114 118anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
139 141first strand
Strand 2
E
147 149anti-parallel
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