Analysis of interatomic Contacts of Structural Units in PDB entry:
5HM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HM3 entry

There are 2 chains in PDB entry 5HM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2GLU 508
A
 THR 510SER 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5HM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 40Right-handed alpha
Helix 2
AA2
A
64 82Right-handed alpha
Helix 3
AA3
A
95 109Right-handed alpha
Helix 4
AA4
A
123 135Right-handed alpha
Helix 5
AA5
A
142 155Right-handed alpha
Helix 6
AA6
A
168 170Right-handed 310
Helix 7
AA7
A
171 178Right-handed 310
Helix 8
AA8
A
209 223Right-handed alpha
Helix 9
AA9
A
238 250Right-handed alpha
Helix 10
AB1
A
259 266Right-handed alpha
Helix 11
AB2
A
267 275Right-handed alpha
Helix 12
AB3
A
289 300Right-handed alpha
Helix 13
AB4
A
325 337Right-handed alpha
Helix 14
AB5
A
338 340Right-handed 310
Helix 15
AB6
A
353 356Right-handed 310
Helix 16
AB7
A
375 379Right-handed alpha
Helix 17
AB8
A
441 450Right-handed alpha
Helix 18
AB9
A
492 494Right-handed 310
Helix 19
AC1
A
503 515Right-handed alpha
Helix 20
AC2
A
534 538Right-handed 310
Helix 21
AC3
A
570 587Right-handed alpha
Helix 22
AC4
A
610 620Right-handed alpha
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There are 8 sheets in PDB entry 5HM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
20 21anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
255 257parallel
Strand 4
A
229 232parallel
Strand 5
A
284 288parallel
Strand 6
A
314 319parallel
Strand 7
A
346 351parallel
Strand 8
A
358 361anti-parallel
Strand 9
A
401 402anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
87 90parallel
Strand 3
A
138 141parallel
Strand 4
A
163 166parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
202 207anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 374first strand
Strand 2
A
393 397anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
406 412anti-parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
470 481anti-parallel
Strand 5
A
451 452anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
406 412anti-parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
470 481anti-parallel
Strand 5
A
484 490anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 529first strand
Strand 2
A
554 562anti-parallel
Strand 3
A
592 596parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il