Analysis of interatomic Contacts of Structural Units in PDB entry:
5HM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HM4 entry

There is 1 chain in PDB entry 5HM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 21LYS 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5HM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
23 25Right-handed 310
Helix 2
AA2
B
52 57Right-handed alpha
Helix 3
AA3
B
104 118Right-handed alpha
Helix 4
AA4
B
123 128Right-handed 310
Helix 5
AA5
B
149 160Right-handed alpha
Helix 6
AA6
B
164 169Right-handed alpha
Helix 7
AA7
B
172 179Right-handed alpha
Helix 8
AA8
B
208 215Right-handed alpha
Helix 9
AA9
B
230 240Right-handed alpha
Helix 10
AB1
B
252 261Right-handed alpha
Helix 11
AB2
B
291 302Right-handed alpha
Helix 12
AB3
B
304 310Right-handed alpha
Helix 13
AB4
B
328 334Right-handed 310
Helix 14
AB5
B
335 343Right-handed alpha
Helix 15
AB6
B
347 359Right-handed alpha
Helix 16
AB7
B
387 404Right-handed alpha
Helix 17
AB8
B
414 425Right-handed alpha
Helix 18
AB9
B
441 451Right-handed alpha
Helix 19
AC1
B
452 457Right-handed 310
Helix 20
AC2
B
472 482Right-handed alpha
Helix 21
AC3
B
487 506Right-handed alpha
Helix 22
AC4
B
544 547Right-handed 310
Helix 23
AC5
B
548 556Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5HM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 196first strand
Strand 2
B
199 204anti-parallel
Strand 3
B
222 226anti-parallel
Strand 4
B
27 31parallel
Strand 5
B
245 246parallel
Strand 6
B
519 520anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 83first strand
Strand 2
B
86 91anti-parallel
Strand 3
B
140 145anti-parallel
Strand 4
B
130 137anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 318first strand
Strand 2
B
508 516anti-parallel
Strand 3
B
273 282anti-parallel
Strand 4
B
429 432anti-parallel
Strand 5
B
379 382parallel
Strand 6
B
408 411parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
525 526first strand
Strand 2
B
557 558anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il