Analysis of interatomic Contacts of Structural Units in PDB entry:
5HM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HM5 entry

There is 1 chain in PDB entry 5HM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 852
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 5HM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 40Right-handed alpha
Helix 2
AA2
A
45 70Right-handed alpha
Helix 3
AA3
A
87 94Right-handed alpha
Helix 4
AA4
A
99 106Right-handed alpha
Helix 5
AA5
A
110 118Right-handed alpha
Helix 6
AA6
A
139 149Right-handed alpha
Helix 7
AA7
A
158 162Right-handed 310
Helix 8
AA8
A
163 167Right-handed 310
Helix 9
AA9
A
170 177Right-handed alpha
Helix 10
AB1
A
182 195Right-handed alpha
Helix 11
AB2
A
199 208Right-handed alpha
Helix 12
AB3
A
210 216Right-handed alpha
Helix 13
AB4
A
224 234Right-handed alpha
Helix 14
AB5
A
239 266Right-handed alpha
Helix 15
AB6
A
274 281Right-handed alpha
Helix 16
AB7
A
281 304Right-handed alpha
Helix 17
AB8
A
308 319Right-handed alpha
Helix 18
AB9
A
322 327Right-handed alpha
Helix 19
AC1
A
330 338Right-handed alpha
Helix 20
AC2
A
342 350Right-handed alpha
Helix 21
AC3
A
350 359Right-handed alpha
Helix 22
AC4
A
363 375Right-handed alpha
Helix 23
AC5
A
376 383Right-handed alpha
Helix 24
AC6
A
384 394Right-handed alpha
Helix 25
AC7
A
398 415Right-handed alpha
Helix 26
AC8
A
420 432Right-handed alpha
Helix 27
AC9
A
433 443Right-handed alpha
Helix 28
AD1
A
445 451Right-handed alpha
Helix 29
AD2
A
456 464Right-handed alpha
Helix 30
AD3
A
466 472Right-handed alpha
Helix 31
AD4
A
477 489Right-handed alpha
Helix 32
AD5
A
490 496Right-handed alpha
Helix 33
AD6
A
498 505Right-handed alpha
Helix 34
AD7
A
508 517Right-handed alpha
Helix 35
AD8
A
518 525Right-handed alpha
Helix 36
AD9
A
527 538Right-handed alpha
Helix 37
AE1
A
540 546Right-handed alpha
Helix 38
AE2
A
548 555Right-handed alpha
Helix 39
AE3
A
558 567Right-handed alpha
Helix 40
AE4
A
569 574Right-handed alpha
Helix 41
AE5
A
577 586Right-handed alpha
Helix 42
AE6
A
590 595Right-handed alpha
Helix 43
AE7
A
692 704Right-handed alpha
Helix 44
AE8
A
705 716Right-handed alpha
Helix 45
AE9
A
718 728Right-handed alpha
Helix 46
AF1
A
730 735Right-handed alpha
Helix 47
AF2
A
741 749Right-handed alpha
Helix 48
AF3
A
751 758Right-handed alpha
Helix 49
AF4
A
761 773Right-handed alpha
Helix 50
AF5
A
774 782Right-handed alpha
Helix 51
AF6
A
783 790Right-handed alpha
Helix 52
AF7
A
793 802Right-handed alpha
Helix 53
AF8
A
803 808Right-handed alpha
Helix 54
AF9
A
812 823Right-handed alpha
Helix 55
AG1
A
825 831Right-handed alpha
Helix 56
AG2
A
833 840Right-handed alpha
Helix 57
AG3
A
843 852Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5HM5.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
85 86anti-parallel
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