Analysis of interatomic Contacts of Structural Units in PDB entry:
5HMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HMA entry

There are 2 chains in PDB entry 5HMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 34VAL 224
C
 UNK 103UNK 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5HMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 40Right-handed 310
Helix 2
AA2
A
71 75Right-handed alpha
Helix 3
AA3
A
102 104Right-handed 310
Helix 4
AA4
A
121 125Right-handed 310
Helix 5
AA5
A
177 181Right-handed 310
Helix 6
AA6
A
213 219Right-handed alpha
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There are 2 sheets in PDB entry 5HMA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
56 62anti-parallel
Strand 3
A
66 70anti-parallel
Strand 4
A
106 111anti-parallel
Strand 5
A
91 101anti-parallel
Strand 6
A
80 84anti-parallel
Strand 7
A
42 46anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 161first strand
Strand 2
A
164 172anti-parallel
Strand 3
A
206 212anti-parallel
Strand 4
A
192 200anti-parallel
Strand 5
A
145 161first strand
Strand 6
A
133 139anti-parallel
Strand 7
A
184 186anti-parallel
Strand 8
A
192 200anti-parallel
Strand 9
C
104 105anti-parallel
Strand 10
A
192 200anti-parallel
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