Analysis of interatomic Contacts of Structural Units in PDB entry:
5HMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HMF entry

There are 2 chains in PDB entry 5HMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1LYS 454
B
 ARG 0LYS 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5HMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 72Right-handed 310
Helix 2
AA2
A
74 78Right-handed 310
Helix 3
AA3
A
82 99Right-handed alpha
Helix 4
AA4
A
103 121Right-handed alpha
Helix 5
AA5
A
140 153Right-handed alpha
Helix 6
AA6
A
166 170Right-handed 310
Helix 7
AA7
A
180 196Right-handed alpha
Helix 8
AA8
A
217 232Right-handed alpha
Helix 9
AA9
A
243 253Right-handed alpha
Helix 10
AB1
A
255 263Right-handed alpha
Helix 11
AB2
A
279 281Right-handed 310
Helix 12
AB3
A
282 290Right-handed alpha
Helix 13
AB4
A
296 303Right-handed alpha
Helix 14
AB5
A
309 316Right-handed alpha
Helix 15
AB6
A
334 346Right-handed alpha
Helix 16
AB7
A
347 350Right-handed 310
Helix 17
AB8
A
353 357Right-handed 310
Helix 18
AB9
A
359 367Right-handed alpha
Helix 19
AC1
A
368 375Right-handed alpha
Helix 20
AC2
A
398 402Right-handed 310
Helix 21
AC3
A
406 414Right-handed alpha
Helix 22
AC4
A
440 452Right-handed alpha
Helix 23
AC5
B
65 72Right-handed 310
Helix 24
AC6
B
74 78Right-handed 310
Helix 25
AC7
B
81 99Right-handed alpha
Helix 26
AC8
B
103 121Right-handed alpha
Helix 27
AC9
B
140 153Right-handed alpha
Helix 28
AD1
B
180 196Right-handed alpha
Helix 29
AD2
B
217 232Right-handed alpha
Helix 30
AD3
B
243 253Right-handed alpha
Helix 31
AD4
B
255 263Right-handed alpha
Helix 32
AD5
B
279 281Right-handed 310
Helix 33
AD6
B
282 290Right-handed alpha
Helix 34
AD7
B
296 303Right-handed alpha
Helix 35
AD8
B
309 316Right-handed alpha
Helix 36
AD9
B
334 346Right-handed alpha
Helix 37
AE1
B
347 350Right-handed 310
Helix 38
AE2
B
353 357Right-handed 310
Helix 39
AE3
B
359 367Right-handed alpha
Helix 40
AE4
B
368 375Right-handed alpha
Helix 41
AE5
B
398 402Right-handed 310
Helix 42
AE6
B
406 414Right-handed alpha
Helix 43
AE7
B
440 452Right-handed alpha
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There are 6 sheets in PDB entry 5HMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
19 28anti-parallel
Strand 3
A
1 11anti-parallel
Strand 4
A
44 49parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
19 28anti-parallel
Strand 3
A
1 11anti-parallel
Strand 4
A
53 57parallel
Strand 5
A
391 395anti-parallel
Strand 6
A
422 425anti-parallel
Strand 7
A
428 432anti-parallel
Strand 8
A
435 436anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
123 130parallel
Strand 3
A
155 160parallel
Strand 4
A
204 208parallel
Strand 5
A
234 239parallel
Strand 6
A
270 274parallel
Strand 7
A
292 295parallel
Strand 8
A
319 322parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
19 28anti-parallel
Strand 3
B
1 11anti-parallel
Strand 4
B
44 49parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
19 28anti-parallel
Strand 3
B
1 11anti-parallel
Strand 4
B
53 57parallel
Strand 5
B
391 395anti-parallel
Strand 6
B
422 425anti-parallel
Strand 7
B
428 432anti-parallel
Strand 8
B
435 436anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
123 130parallel
Strand 3
B
155 162parallel
Strand 4
B
204 210parallel
Strand 5
B
234 239parallel
Strand 6
B
270 274parallel
Strand 7
B
292 295parallel
Strand 8
B
320 322parallel
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