Analysis of interatomic Contacts of Structural Units in PDB entry:
5HMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HMP entry

There is 1 chain in PDB entry 5HMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	SER 685

There are 60 helices in PDB entry 5HMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	75	Right-handed 310
Helix 2	AA2	A	79	93	Right-handed alpha
Helix 3	AA3	A	118	126	Right-handed alpha
Helix 4	AA4	A	136	152	Right-handed alpha
Helix 5	AA5	A	166	182	Right-handed alpha
Helix 6	AA6	A	189	205	Right-handed alpha
Helix 7	AA7	A	244	248	Right-handed 310
Helix 8	AA8	A	257	265	Right-handed alpha
Helix 9	AA9	A	272	276	Right-handed 310
Helix 10	AB1	A	283	288	Right-handed alpha
Helix 11	AB2	A	298	313	Right-handed alpha
Helix 12	AB3	A	316	335	Right-handed alpha
Helix 13	AB4	A	352	362	Right-handed alpha
Helix 14	AB5	A	365	373	Right-handed alpha
Helix 15	AB6	A	390	421	Right-handed alpha
Helix 16	AB7	A	446	468	Right-handed alpha
Helix 17	AB8	A	468	477	Right-handed alpha
Helix 18	AB9	A	490	499	Right-handed alpha
Helix 19	AC1	A	502	513	Right-handed alpha
Helix 20	AC2	A	517	530	Right-handed alpha
Helix 21	AC3	A	561	568	Right-handed alpha
Helix 22	AC4	A	571	580	Right-handed alpha
Helix 23	AC5	A	583	590	Right-handed alpha
Helix 24	AC6	A	623	641	Right-handed alpha
Helix 25	AC7	A	662	674	Right-handed alpha
Helix 26	AC8	A	674	685	Right-handed alpha
Helix 27	AC9	A	692	698	Right-handed alpha
Helix 28	AD1	A	714	723	Right-handed alpha
Helix 29	AD2	A	727	729	Right-handed 310
Helix 30	AD3	A	745	750	Right-handed alpha
Helix 31	AD4	B	71	75	Right-handed 310
Helix 32	AD5	B	79	92	Right-handed alpha
Helix 33	AD6	B	118	125	Right-handed alpha
Helix 34	AD7	B	136	150	Right-handed alpha
Helix 35	AD8	B	166	183	Right-handed alpha
Helix 36	AD9	B	190	205	Right-handed alpha
Helix 37	AE1	B	244	248	Right-handed 310
Helix 38	AE2	B	257	265	Right-handed alpha
Helix 39	AE3	B	272	276	Right-handed 310
Helix 40	AE4	B	283	288	Right-handed alpha
Helix 41	AE5	B	298	313	Right-handed alpha
Helix 42	AE6	B	316	334	Right-handed alpha
Helix 43	AE7	B	352	363	Right-handed alpha
Helix 44	AE8	B	365	373	Right-handed alpha
Helix 45	AE9	B	390	421	Right-handed alpha
Helix 46	AF1	B	446	468	Right-handed alpha
Helix 47	AF2	B	468	478	Right-handed alpha
Helix 48	AF3	B	490	499	Right-handed alpha
Helix 49	AF4	B	502	513	Right-handed alpha
Helix 50	AF5	B	517	530	Right-handed alpha
Helix 51	AF6	B	561	568	Right-handed alpha
Helix 52	AF7	B	571	580	Right-handed alpha
Helix 53	AF8	B	583	590	Right-handed alpha
Helix 54	AF9	B	623	641	Right-handed alpha
Helix 55	AG1	B	662	674	Right-handed alpha
Helix 56	AG2	B	674	684	Right-handed alpha
Helix 57	AG3	B	691	699	Right-handed alpha
Helix 58	AG4	B	712	725	Right-handed alpha
Helix 59	AG5	B	727	729	Right-handed 310
Helix 60	AG6	B	743	754	Right-handed alpha

There are 14 sheets in PDB entry 5HMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	17	first strand
Strand 2	A	21	27	anti-parallel
Strand 3	A	39	41	anti-parallel
Strand 4	A	47	49	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	104	108	anti-parallel
Strand 3	A	643	650	parallel
Strand 4	A	155	160	parallel
Strand 5	A	429	435	parallel
Strand 6	A	219	226	anti-parallel
Strand 7	A	232	240	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	215	216	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	345	347	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	384	388	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	537	first strand
Strand 2	A	545	549	anti-parallel
Strand 3	A	554	558	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	691	first strand
Strand 2	A	737	740	anti-parallel
Strand 3	A	731	733	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	17	first strand
Strand 2	B	21	27	anti-parallel
Strand 3	B	37	42	anti-parallel
Strand 4	B	47	51	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	104	108	anti-parallel
Strand 3	B	643	650	parallel
Strand 4	B	155	160	parallel
Strand 5	B	430	435	parallel
Strand 6	B	219	226	anti-parallel
Strand 7	B	232	240	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	215	216	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	345	347	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	379	first strand
Strand 2	B	384	388	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	537	first strand
Strand 2	B	545	549	anti-parallel
Strand 3	B	554	558	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	690	first strand
Strand 2	B	738	740	anti-parallel
Strand 3	B	731	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HMP