Analysis of interatomic Contacts of Structural Units in PDB entry:
5HMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HMQ entry

There are 3 chains in PDB entry 5HMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -1	ARG 626
B	ALA -1	SER 627
C	ALA -1	TYR 38

There are161 helices in PDB entry 5HMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	10	Right-handed 310
Helix 2	AA2	A	13	24	Right-handed alpha
Helix 3	AA3	A	33	39	Right-handed alpha
Helix 4	AA4	A	42	54	Right-handed alpha
Helix 5	AA5	A	70	72	Right-handed 310
Helix 6	AA6	A	73	92	Right-handed alpha
Helix 7	AA7	A	109	128	Right-handed alpha
Helix 8	AA8	A	144	156	Right-handed alpha
Helix 9	AA9	A	166	171	Right-handed alpha
Helix 10	AB1	A	175	182	Right-handed 310
Helix 11	AB2	A	183	185	Right-handed 310
Helix 12	AB3	A	201	210	Right-handed alpha
Helix 13	AB4	A	219	230	Right-handed alpha
Helix 14	AB5	A	249	275	Right-handed alpha
Helix 15	AB6	A	304	318	Right-handed alpha
Helix 16	AB7	A	349	359	Right-handed alpha
Helix 17	AB8	A	371	382	Right-handed alpha
Helix 18	AB9	A	421	425	Right-handed alpha
Helix 19	AC1	A	449	451	Right-handed 310
Helix 20	AC2	A	452	464	Right-handed alpha
Helix 21	AC3	A	502	509	Right-handed alpha
Helix 22	AC4	A	528	540	Right-handed alpha
Helix 23	AC5	A	547	558	Right-handed alpha
Helix 24	AC6	A	563	571	Right-handed alpha
Helix 25	AC7	A	611	613	Right-handed 310
Helix 26	AC8	A	614	625	Right-handed alpha
Helix 27	AC9	B	8	10	Right-handed 310
Helix 28	AD1	B	13	24	Right-handed alpha
Helix 29	AD2	B	33	39	Right-handed alpha
Helix 30	AD3	B	42	54	Right-handed alpha
Helix 31	AD4	B	70	72	Right-handed 310
Helix 32	AD5	B	73	92	Right-handed alpha
Helix 33	AD6	B	109	127	Right-handed alpha
Helix 34	AD7	B	144	156	Right-handed alpha
Helix 35	AD8	B	166	171	Right-handed alpha
Helix 36	AD9	B	175	182	Right-handed 310
Helix 37	AE1	B	183	185	Right-handed 310
Helix 38	AE2	B	201	210	Right-handed alpha
Helix 39	AE3	B	219	230	Right-handed alpha
Helix 40	AE4	B	249	275	Right-handed alpha
Helix 41	AE5	B	304	318	Right-handed alpha
Helix 42	AE6	B	349	359	Right-handed alpha
Helix 43	AE7	B	371	382	Right-handed alpha
Helix 44	AE8	B	421	425	Right-handed alpha
Helix 45	AE9	B	449	451	Right-handed 310
Helix 46	AF1	B	452	464	Right-handed alpha
Helix 47	AF2	B	502	509	Right-handed alpha
Helix 48	AF3	B	528	540	Right-handed alpha
Helix 49	AF4	B	547	558	Right-handed alpha
Helix 50	AF5	B	562	571	Right-handed alpha
Helix 51	AF6	B	591	595	Right-handed 310
Helix 52	AF7	B	611	613	Right-handed 310
Helix 53	AF8	B	614	626	Right-handed alpha
Helix 54	AF9	C	8	10	Right-handed 310
Helix 55	AG1	C	13	24	Right-handed alpha
Helix 56	AG2	C	33	39	Right-handed alpha
Helix 57	AG3	C	42	54	Right-handed alpha
Helix 58	AG4	C	70	72	Right-handed 310
Helix 59	AG5	C	73	92	Right-handed alpha
Helix 60	AG6	C	109	127	Right-handed alpha
Helix 61	AG7	C	144	156	Right-handed alpha
Helix 62	AG8	C	166	171	Right-handed alpha
Helix 63	AG9	C	175	182	Right-handed 310
Helix 64	AH1	C	183	185	Right-handed 310
Helix 65	AH2	C	201	210	Right-handed alpha
Helix 66	AH3	C	219	230	Right-handed alpha
Helix 67	AH4	C	249	275	Right-handed alpha
Helix 68	AH5	C	304	318	Right-handed alpha
Helix 69	AH6	C	349	359	Right-handed alpha
Helix 70	AH7	C	371	382	Right-handed alpha
Helix 71	AH8	C	421	425	Right-handed alpha
Helix 72	AH9	C	449	451	Right-handed 310
Helix 73	AI1	C	452	464	Right-handed alpha
Helix 74	AI2	C	502	509	Right-handed alpha
Helix 75	AI3	C	528	540	Right-handed alpha
Helix 76	AI4	C	547	558	Right-handed alpha
Helix 77	AI5	C	561	571	Right-handed alpha
Helix 78	AI6	C	591	595	Right-handed 310
Helix 79	AI7	C	611	613	Right-handed 310
Helix 80	AI8	C	614	624	Right-handed alpha
Helix 81	AI9	D	8	10	Right-handed 310
Helix 82	AJ1	D	13	24	Right-handed alpha
Helix 83	AJ2	D	33	39	Right-handed alpha
Helix 84	AJ3	D	42	54	Right-handed alpha
Helix 85	AJ4	D	70	72	Right-handed 310
Helix 86	AJ5	D	73	92	Right-handed alpha
Helix 87	AJ6	D	109	128	Right-handed alpha
Helix 88	AJ7	D	144	156	Right-handed alpha
Helix 89	AJ8	D	166	171	Right-handed alpha
Helix 90	AJ9	D	175	182	Right-handed 310
Helix 91	AK1	D	183	185	Right-handed 310
Helix 92	AK2	D	201	210	Right-handed alpha
Helix 93	AK3	D	219	230	Right-handed alpha
Helix 94	AK4	D	249	275	Right-handed alpha
Helix 95	AK5	D	304	318	Right-handed alpha
Helix 96	AK6	D	349	359	Right-handed alpha
Helix 97	AK7	D	371	382	Right-handed alpha
Helix 98	AK8	D	421	425	Right-handed alpha
Helix 99	AK9	D	449	451	Right-handed 310
Helix 100	AL1	D	452	464	Right-handed alpha
Helix 101	AL2	D	502	509	Right-handed alpha
Helix 102	AL3	D	528	540	Right-handed alpha
Helix 103	AL4	D	547	558	Right-handed alpha
Helix 104	AL5	D	563	571	Right-handed alpha
Helix 105	AL6	D	591	595	Right-handed 310
Helix 106	AL7	D	611	613	Right-handed 310
Helix 107	AL8	D	614	625	Right-handed alpha
Helix 108	AL9	E	8	10	Right-handed 310
Helix 109	AM1	E	13	24	Right-handed alpha
Helix 110	AM2	E	33	39	Right-handed alpha
Helix 111	AM3	E	42	54	Right-handed alpha
Helix 112	AM4	E	70	72	Right-handed 310
Helix 113	AM5	E	73	92	Right-handed alpha
Helix 114	AM6	E	109	128	Right-handed alpha
Helix 115	AM7	E	144	156	Right-handed alpha
Helix 116	AM8	E	166	171	Right-handed alpha
Helix 117	AM9	E	175	182	Right-handed 310
Helix 118	AN1	E	183	185	Right-handed 310
Helix 119	AN2	E	201	210	Right-handed alpha
Helix 120	AN3	E	219	230	Right-handed alpha
Helix 121	AN4	E	249	275	Right-handed alpha
Helix 122	AN5	E	304	318	Right-handed alpha
Helix 123	AN6	E	349	359	Right-handed alpha
Helix 124	AN7	E	371	382	Right-handed alpha
Helix 125	AN8	E	421	425	Right-handed alpha
Helix 126	AN9	E	449	451	Right-handed 310
Helix 127	AO1	E	452	464	Right-handed alpha
Helix 128	AO2	E	502	509	Right-handed alpha
Helix 129	AO3	E	528	540	Right-handed alpha
Helix 130	AO4	E	547	558	Right-handed alpha
Helix 131	AO5	E	563	571	Right-handed alpha
Helix 132	AO6	E	591	595	Right-handed 310
Helix 133	AO7	E	611	613	Right-handed 310
Helix 134	AO8	E	614	627	Right-handed alpha
Helix 135	AO9	F	8	10	Right-handed 310
Helix 136	AP1	F	13	24	Right-handed alpha
Helix 137	AP2	F	33	39	Right-handed alpha
Helix 138	AP3	F	42	54	Right-handed alpha
Helix 139	AP4	F	70	72	Right-handed 310
Helix 140	AP5	F	73	92	Right-handed alpha
Helix 141	AP6	F	109	128	Right-handed alpha
Helix 142	AP7	F	144	156	Right-handed alpha
Helix 143	AP8	F	166	171	Right-handed alpha
Helix 144	AP9	F	175	182	Right-handed 310
Helix 145	AQ1	F	183	185	Right-handed 310
Helix 146	AQ2	F	201	210	Right-handed alpha
Helix 147	AQ3	F	219	230	Right-handed alpha
Helix 148	AQ4	F	249	275	Right-handed alpha
Helix 149	AQ5	F	304	318	Right-handed alpha
Helix 150	AQ6	F	349	359	Right-handed alpha
Helix 151	AQ7	F	371	382	Right-handed alpha
Helix 152	AQ8	F	421	425	Right-handed alpha
Helix 153	AQ9	F	449	451	Right-handed 310
Helix 154	AR1	F	452	464	Right-handed alpha
Helix 155	AR2	F	502	509	Right-handed alpha
Helix 156	AR3	F	528	540	Right-handed alpha
Helix 157	AR4	F	547	558	Right-handed alpha
Helix 158	AR5	F	563	571	Right-handed alpha
Helix 159	AR6	F	591	595	Right-handed 310
Helix 160	AR7	F	611	613	Right-handed 310
Helix 161	AR8	F	614	627	Right-handed alpha

There are 25 sheets in PDB entry 5HMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	28	32	parallel
Strand 3	A	56	64	parallel
Strand 4	A	95	99	parallel
Strand 5	A	130	134	parallel
Strand 6	A	160	165	parallel
Strand 7	A	187	192	parallel
Strand 8	A	236	238	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	400	402	anti-parallel
Strand 3	A	408	413	anti-parallel
Strand 4	A	361	369	parallel
Strand 5	A	293	302	anti-parallel
Strand 6	A	339	344	parallel
Strand 7	A	331	336	anti-parallel
Strand 8	A	321	326	anti-parallel
Strand 9	A	426	428	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	482	487	anti-parallel
Strand 3	A	471	472	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	482	487	anti-parallel
Strand 3	A	494	499	anti-parallel
Strand 4	A	440	448	parallel
Strand 5	A	518	525	anti-parallel
Strand 6	A	597	603	parallel
Strand 7	A	583	588	anti-parallel
Strand 8	A	574	577	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	28	32	parallel
Strand 3	B	56	64	parallel
Strand 4	B	95	99	parallel
Strand 5	B	130	134	parallel
Strand 6	B	160	165	parallel
Strand 7	B	187	192	parallel
Strand 8	B	236	238	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	387	first strand
Strand 2	B	400	402	anti-parallel
Strand 3	B	408	413	anti-parallel
Strand 4	B	361	369	parallel
Strand 5	B	293	302	anti-parallel
Strand 6	B	339	344	parallel
Strand 7	B	331	336	anti-parallel
Strand 8	B	321	326	anti-parallel
Strand 9	B	426	428	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	499	first strand
Strand 2	B	441	448	parallel
Strand 3	B	518	525	anti-parallel
Strand 4	B	597	604	parallel
Strand 5	B	583	588	anti-parallel
Strand 6	B	574	577	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	486	487	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	472	first strand
Strand 2	B	482	483	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	28	32	parallel
Strand 3	C	56	64	parallel
Strand 4	C	95	99	parallel
Strand 5	C	130	134	parallel
Strand 6	C	160	165	parallel
Strand 7	C	187	192	parallel
Strand 8	C	236	238	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	387	first strand
Strand 2	C	400	402	anti-parallel
Strand 3	C	408	412	anti-parallel
Strand 4	C	361	369	parallel
Strand 5	C	293	302	anti-parallel
Strand 6	C	339	344	parallel
Strand 7	C	331	336	anti-parallel
Strand 8	C	321	326	anti-parallel
Strand 9	C	426	428	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	482	487	anti-parallel
Strand 3	C	471	472	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	482	487	anti-parallel
Strand 3	C	494	499	anti-parallel
Strand 4	C	438	448	parallel
Strand 5	C	518	526	anti-parallel
Strand 6	C	597	604	parallel
Strand 7	C	583	588	anti-parallel
Strand 8	C	574	577	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	28	32	parallel
Strand 3	D	56	64	parallel
Strand 4	D	95	99	parallel
Strand 5	D	130	134	parallel
Strand 6	D	160	165	parallel
Strand 7	D	187	192	parallel
Strand 8	D	236	238	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	386	387	first strand
Strand 2	D	400	402	anti-parallel
Strand 3	D	408	412	anti-parallel
Strand 4	D	361	369	parallel
Strand 5	D	293	302	anti-parallel
Strand 6	D	339	344	parallel
Strand 7	D	331	336	anti-parallel
Strand 8	D	321	326	anti-parallel
Strand 9	D	426	428	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	468	first strand
Strand 2	D	485	487	anti-parallel
Strand 3	D	494	499	anti-parallel
Strand 4	D	441	448	parallel
Strand 5	D	518	525	anti-parallel
Strand 6	D	597	604	parallel
Strand 7	D	583	588	anti-parallel
Strand 8	D	574	577	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	471	472	first strand
Strand 2	D	482	483	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	28	32	parallel
Strand 3	E	56	64	parallel
Strand 4	E	95	99	parallel
Strand 5	E	130	134	parallel
Strand 6	E	160	165	parallel
Strand 7	E	187	192	parallel
Strand 8	E	236	238	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	386	387	first strand
Strand 2	E	400	402	anti-parallel
Strand 3	E	408	412	anti-parallel
Strand 4	E	361	369	parallel
Strand 5	E	293	302	anti-parallel
Strand 6	E	339	344	parallel
Strand 7	E	331	336	anti-parallel
Strand 8	E	321	326	anti-parallel
Strand 9	E	426	428	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	467	468	first strand
Strand 2	E	482	487	anti-parallel
Strand 3	E	471	472	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	467	468	first strand
Strand 2	E	482	487	anti-parallel
Strand 3	E	494	499	anti-parallel
Strand 4	E	441	448	parallel
Strand 5	E	518	525	anti-parallel
Strand 6	E	597	604	parallel
Strand 7	E	583	588	anti-parallel
Strand 8	E	574	577	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	28	32	parallel
Strand 3	F	56	64	parallel
Strand 4	F	95	99	parallel
Strand 5	F	130	134	parallel
Strand 6	F	160	165	parallel
Strand 7	F	187	192	parallel
Strand 8	F	236	238	parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	386	387	first strand
Strand 2	F	400	402	anti-parallel
Strand 3	F	408	412	anti-parallel
Strand 4	F	361	369	parallel
Strand 5	F	293	302	anti-parallel
Strand 6	F	339	344	parallel
Strand 7	F	331	336	anti-parallel
Strand 8	F	321	326	anti-parallel
Strand 9	F	426	428	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	467	468	first strand
Strand 2	F	482	487	anti-parallel
Strand 3	F	471	472	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	467	468	first strand
Strand 2	F	482	487	anti-parallel
Strand 3	F	494	499	anti-parallel
Strand 4	F	440	448	parallel
Strand 5	F	518	525	anti-parallel
Strand 6	F	597	604	parallel
Strand 7	F	583	588	anti-parallel
Strand 8	F	574	577	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HMQ