Analysis of interatomic Contacts of Structural Units in PDB entry:
5HMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HMS entry

There are 2 chains in PDB entry 5HMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 330
B
 MET 1LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5HMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
13 21Right-handed alpha
Helix 3
AA3
A
22 25Right-handed 310
Helix 4
AA4
A
27 29Right-handed 310
Helix 5
AA5
A
60 72Right-handed alpha
Helix 6
AA6
A
91 95Right-handed 310
Helix 7
AA7
A
99 112Right-handed alpha
Helix 8
AA8
A
123 127Right-handed 310
Helix 9
AA9
A
142 161Right-handed alpha
Helix 10
AB1
A
173 185Right-handed alpha
Helix 11
AB2
A
205 213Right-handed alpha
Helix 12
AB3
A
230 244Right-handed alpha
Helix 13
AB4
A
254 256Right-handed 310
Helix 14
AB5
A
257 268Right-handed alpha
Helix 15
AB6
A
278 291Right-handed alpha
Helix 16
AB7
A
295 311Right-handed alpha
Helix 17
AB8
A
319 330Right-handed alpha
Helix 18
AB9
B
7 11Right-handed 310
Helix 19
AC1
B
13 21Right-handed alpha
Helix 20
AC2
B
27 29Right-handed 310
Helix 21
AC3
B
57 71Right-handed alpha
Helix 22
AC4
B
91 95Right-handed 310
Helix 23
AC5
B
99 112Right-handed alpha
Helix 24
AC6
B
123 127Right-handed 310
Helix 25
AC7
B
142 160Right-handed alpha
Helix 26
AC8
B
173 185Right-handed alpha
Helix 27
AC9
B
202 204Right-handed 310
Helix 28
AD1
B
205 212Right-handed alpha
Helix 29
AD2
B
230 244Right-handed alpha
Helix 30
AD3
B
254 256Right-handed 310
Helix 31
AD4
B
257 268Right-handed alpha
Helix 32
AD5
B
278 291Right-handed alpha
Helix 33
AD6
B
295 310Right-handed alpha
Helix 34
AD7
B
319 328Right-handed alpha
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There are 4 sheets in PDB entry 5HMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
54 56anti-parallel
Strand 3
A
31 38parallel
Strand 4
A
75 81parallel
Strand 5
A
116 121parallel
Strand 6
A
164 167parallel
Strand 7
A
192 193parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
54 56anti-parallel
Strand 3
A
31 38parallel
Strand 4
A
314 317parallel
Strand 5
A
273 277parallel
Strand 6
A
249 252parallel
Strand 7
A
198 199parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
54 56anti-parallel
Strand 3
B
31 38parallel
Strand 4
B
75 81parallel
Strand 5
B
116 121parallel
Strand 6
B
164 167parallel
Strand 7
B
192 193parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
54 56anti-parallel
Strand 3
B
31 38parallel
Strand 4
B
314 317parallel
Strand 5
B
273 277parallel
Strand 6
B
249 252parallel
Strand 7
B
198 199parallel
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