Analysis of interatomic Contacts of Structural Units in PDB entry:
5HN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HN1 entry

There are 2 chains in PDB entry 5HN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49VAL 206
B
 PRO 50VAL 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5HN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
139 145Right-handed alpha
Helix 2
AA2
A
147 152Right-handed alpha
Helix 3
AA3
A
195 199Right-handed 310
Helix 4
AA4
B
139 145Right-handed alpha
Helix 5
AA5
B
147 152Right-handed alpha
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There are 7 sheets in PDB entry 5HN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
107 113anti-parallel
Strand 4
A
156 161anti-parallel
Strand 5
A
164 169anti-parallel
Strand 6
A
201 205anti-parallel
Strand 7
A
58 64anti-parallel
Strand 8
A
91 95anti-parallel
Strand 9
A
107 113anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
185 186anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
188 190anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 137first strand
Strand 2
B
118 123anti-parallel
Strand 3
B
107 113anti-parallel
Strand 4
B
155 159anti-parallel
Strand 5
B
166 169anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 137first strand
Strand 2
B
118 123anti-parallel
Strand 3
B
107 113anti-parallel
Strand 4
B
91 95anti-parallel
Strand 5
B
58 63anti-parallel
Strand 6
B
202 205anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 73first strand
Strand 2
B
76 81anti-parallel
Strand 3
B
185 186anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
188 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il