Analysis of interatomic Contacts of Structural Units in PDB entry:
5HNA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HNA entry

There are 4 chains in PDB entry 5HNA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 34THR 394
B
 LEU 34THR 394
C
 LEU 34THR 394
D
 LEU 34THR 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 77 helices in PDB entry 5HNA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed 310
Helix 2
AA2
A
40 53Right-handed alpha
Helix 3
AA3
A
58 78Right-handed alpha
Helix 4
AA4
A
82 95Right-handed alpha
Helix 5
AA5
A
101 130Right-handed alpha
Helix 6
AA6
A
141 144Right-handed 310
Helix 7
AA7
A
147 172Right-handed alpha
Helix 8
AA8
A
176 201Right-handed alpha
Helix 9
AA9
A
203 207Right-handed 310
Helix 10
AB1
A
227 231Right-handed 310
Helix 11
AB2
A
232 249Right-handed alpha
Helix 12
AB3
A
249 261Right-handed alpha
Helix 13
AB4
A
267 293Right-handed alpha
Helix 14
AB5
A
296 300Right-handed alpha
Helix 15
AB6
A
312 322Right-handed alpha
Helix 16
AB7
A
323 334Right-handed alpha
Helix 17
AB8
A
338 352Right-handed alpha
Helix 18
AB9
A
353 375Right-handed alpha
Helix 19
AC1
A
378 392Right-handed alpha
Helix 20
AC2
B
34 39Right-handed 310
Helix 21
AC3
B
40 53Right-handed alpha
Helix 22
AC4
B
58 78Right-handed alpha
Helix 23
AC5
B
82 96Right-handed alpha
Helix 24
AC6
B
101 130Right-handed alpha
Helix 25
AC7
B
141 144Right-handed 310
Helix 26
AC8
B
147 172Right-handed alpha
Helix 27
AC9
B
176 201Right-handed alpha
Helix 28
AD1
B
203 207Right-handed 310
Helix 29
AD2
B
227 231Right-handed 310
Helix 30
AD3
B
232 249Right-handed alpha
Helix 31
AD4
B
249 259Right-handed alpha
Helix 32
AD5
B
268 293Right-handed alpha
Helix 33
AD6
B
296 300Right-handed alpha
Helix 34
AD7
B
312 322Right-handed alpha
Helix 35
AD8
B
323 334Right-handed alpha
Helix 36
AD9
B
338 352Right-handed alpha
Helix 37
AE1
B
353 375Right-handed alpha
Helix 38
AE2
B
378 392Right-handed alpha
Helix 39
AE3
C
34 39Right-handed 310
Helix 40
AE4
C
40 53Right-handed alpha
Helix 41
AE5
C
58 78Right-handed alpha
Helix 42
AE6
C
82 96Right-handed alpha
Helix 43
AE7
C
101 130Right-handed alpha
Helix 44
AE8
C
141 144Right-handed 310
Helix 45
AE9
C
147 172Right-handed alpha
Helix 46
AF1
C
176 201Right-handed alpha
Helix 47
AF2
C
203 207Right-handed 310
Helix 48
AF3
C
227 231Right-handed 310
Helix 49
AF4
C
232 249Right-handed alpha
Helix 50
AF5
C
249 260Right-handed alpha
Helix 51
AF6
C
267 293Right-handed alpha
Helix 52
AF7
C
296 300Right-handed alpha
Helix 53
AF8
C
312 321Right-handed alpha
Helix 54
AF9
C
325 334Right-handed alpha
Helix 55
AG1
C
338 352Right-handed alpha
Helix 56
AG2
C
353 374Right-handed alpha
Helix 57
AG3
C
378 392Right-handed alpha
Helix 58
AG4
D
34 39Right-handed 310
Helix 59
AG5
D
40 53Right-handed alpha
Helix 60
AG6
D
58 78Right-handed alpha
Helix 61
AG7
D
82 96Right-handed alpha
Helix 62
AG8
D
101 130Right-handed alpha
Helix 63
AG9
D
141 144Right-handed 310
Helix 64
AH1
D
147 172Right-handed alpha
Helix 65
AH2
D
176 201Right-handed alpha
Helix 66
AH3
D
203 207Right-handed 310
Helix 67
AH4
D
227 231Right-handed 310
Helix 68
AH5
D
232 244Right-handed alpha
Helix 69
AH6
D
244 249Right-handed alpha
Helix 70
AH7
D
249 261Right-handed alpha
Helix 71
AH8
D
267 293Right-handed alpha
Helix 72
AH9
D
296 300Right-handed alpha
Helix 73
AI1
D
312 321Right-handed alpha
Helix 74
AI2
D
323 334Right-handed alpha
Helix 75
AI3
D
338 352Right-handed alpha
Helix 76
AI4
D
354 374Right-handed alpha
Helix 77
AI5
D
378 392Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5HNA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 135first strand
Strand 2
D
138 139anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il